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Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach

The purpose of this study is to evaluate the accuracy for classification of hepatic tumors by characterization of T1-weighted magnetic resonance (MR) images using two radiomics approaches with machine learning models: texture analysis and topological data analysis using persistent homology. This stu...

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Autores principales: Oyama, Asuka, Hiraoka, Yasuaki, Obayashi, Ippei, Saikawa, Yusuke, Furui, Shigeru, Shiraishi, Kenshiro, Kumagai, Shinobu, Hayashi, Tatsuya, Kotoku, Jun’ichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6584736/
https://www.ncbi.nlm.nih.gov/pubmed/31217445
http://dx.doi.org/10.1038/s41598-019-45283-z
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author Oyama, Asuka
Hiraoka, Yasuaki
Obayashi, Ippei
Saikawa, Yusuke
Furui, Shigeru
Shiraishi, Kenshiro
Kumagai, Shinobu
Hayashi, Tatsuya
Kotoku, Jun’ichi
author_facet Oyama, Asuka
Hiraoka, Yasuaki
Obayashi, Ippei
Saikawa, Yusuke
Furui, Shigeru
Shiraishi, Kenshiro
Kumagai, Shinobu
Hayashi, Tatsuya
Kotoku, Jun’ichi
author_sort Oyama, Asuka
collection PubMed
description The purpose of this study is to evaluate the accuracy for classification of hepatic tumors by characterization of T1-weighted magnetic resonance (MR) images using two radiomics approaches with machine learning models: texture analysis and topological data analysis using persistent homology. This study assessed non-contrast-enhanced fat-suppressed three-dimensional (3D) T1-weighted images of 150 hepatic tumors. The lesions included 50 hepatocellular carcinomas (HCCs), 50 metastatic tumors (MTs), and 50 hepatic hemangiomas (HHs) found respectively in 37, 23, and 33 patients. For classification, texture features were calculated, and also persistence images of three types (degree 0, degree 1 and degree 2) were obtained for each lesion from the 3D MR imaging data. We used three classification models. In the classification of HCC and MT (resp. HCC and HH, HH and MT), we obtained accuracy of 92% (resp. 90%, 73%) by texture analysis, and the highest accuracy of 85% (resp. 84%, 74%) when degree 1 (resp. degree 1, degree 2) persistence images were used. Our methods using texture analysis or topological data analysis allow for classification of the three hepatic tumors with considerable accuracy, and thus might be useful when applied for computer-aided diagnosis with MR images.
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spelling pubmed-65847362019-06-26 Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach Oyama, Asuka Hiraoka, Yasuaki Obayashi, Ippei Saikawa, Yusuke Furui, Shigeru Shiraishi, Kenshiro Kumagai, Shinobu Hayashi, Tatsuya Kotoku, Jun’ichi Sci Rep Article The purpose of this study is to evaluate the accuracy for classification of hepatic tumors by characterization of T1-weighted magnetic resonance (MR) images using two radiomics approaches with machine learning models: texture analysis and topological data analysis using persistent homology. This study assessed non-contrast-enhanced fat-suppressed three-dimensional (3D) T1-weighted images of 150 hepatic tumors. The lesions included 50 hepatocellular carcinomas (HCCs), 50 metastatic tumors (MTs), and 50 hepatic hemangiomas (HHs) found respectively in 37, 23, and 33 patients. For classification, texture features were calculated, and also persistence images of three types (degree 0, degree 1 and degree 2) were obtained for each lesion from the 3D MR imaging data. We used three classification models. In the classification of HCC and MT (resp. HCC and HH, HH and MT), we obtained accuracy of 92% (resp. 90%, 73%) by texture analysis, and the highest accuracy of 85% (resp. 84%, 74%) when degree 1 (resp. degree 1, degree 2) persistence images were used. Our methods using texture analysis or topological data analysis allow for classification of the three hepatic tumors with considerable accuracy, and thus might be useful when applied for computer-aided diagnosis with MR images. Nature Publishing Group UK 2019-06-19 /pmc/articles/PMC6584736/ /pubmed/31217445 http://dx.doi.org/10.1038/s41598-019-45283-z Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Oyama, Asuka
Hiraoka, Yasuaki
Obayashi, Ippei
Saikawa, Yusuke
Furui, Shigeru
Shiraishi, Kenshiro
Kumagai, Shinobu
Hayashi, Tatsuya
Kotoku, Jun’ichi
Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach
title Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach
title_full Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach
title_fullStr Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach
title_full_unstemmed Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach
title_short Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach
title_sort hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional t1-weighted mr images with a radiomics approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6584736/
https://www.ncbi.nlm.nih.gov/pubmed/31217445
http://dx.doi.org/10.1038/s41598-019-45283-z
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