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AmyloWiki: an integrated database for Bacillus velezensis FZB42, the model strain for plant growth-promoting Bacilli

Since its isolation 20 years ago, many studies have been devoted to Bacillus velezensis FZB42 (former name Bacillus amyloliquefaciens subsp. plantarum FZB42), which has been gradually accepted as a model organism for Gram-positive rhizobacteria. FZB42 is different from another widely studied bacteri...

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Detalles Bibliográficos
Autores principales: Fan, Ben, Wang, Cong, Ding, Xiaolei, Zhu, Bingyao, Song, Xiaofeng, Borriss, Rainer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6585148/
https://www.ncbi.nlm.nih.gov/pubmed/31219564
http://dx.doi.org/10.1093/database/baz071
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author Fan, Ben
Wang, Cong
Ding, Xiaolei
Zhu, Bingyao
Song, Xiaofeng
Borriss, Rainer
author_facet Fan, Ben
Wang, Cong
Ding, Xiaolei
Zhu, Bingyao
Song, Xiaofeng
Borriss, Rainer
author_sort Fan, Ben
collection PubMed
description Since its isolation 20 years ago, many studies have been devoted to Bacillus velezensis FZB42 (former name Bacillus amyloliquefaciens subsp. plantarum FZB42), which has been gradually accepted as a model organism for Gram-positive rhizobacteria. FZB42 is different from another widely studied bacterial strain, Bacillus subtilis 168, in its many features that are closely associated with plants. FZB42 represents a large group of Bacillus isolates that are beneficial to plants and of great importance in agriculture. In this work a database for FZB42 named ‘AmyloWiki’ is built to integrate all information of FZB42 available to date. The information includes the genomic, transcriptomic, proteomic, post-translational data as well as FZB42 unique genes, protein regulators, mutant availability, publications and etc. The website is built up with PHP and MySQL with a function of keyword searching, browsing, data-downloading and other functions.
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spelling pubmed-65851482019-06-25 AmyloWiki: an integrated database for Bacillus velezensis FZB42, the model strain for plant growth-promoting Bacilli Fan, Ben Wang, Cong Ding, Xiaolei Zhu, Bingyao Song, Xiaofeng Borriss, Rainer Database (Oxford) Database Tool Since its isolation 20 years ago, many studies have been devoted to Bacillus velezensis FZB42 (former name Bacillus amyloliquefaciens subsp. plantarum FZB42), which has been gradually accepted as a model organism for Gram-positive rhizobacteria. FZB42 is different from another widely studied bacterial strain, Bacillus subtilis 168, in its many features that are closely associated with plants. FZB42 represents a large group of Bacillus isolates that are beneficial to plants and of great importance in agriculture. In this work a database for FZB42 named ‘AmyloWiki’ is built to integrate all information of FZB42 available to date. The information includes the genomic, transcriptomic, proteomic, post-translational data as well as FZB42 unique genes, protein regulators, mutant availability, publications and etc. The website is built up with PHP and MySQL with a function of keyword searching, browsing, data-downloading and other functions. Oxford University Press 2019-06-19 /pmc/articles/PMC6585148/ /pubmed/31219564 http://dx.doi.org/10.1093/database/baz071 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Tool
Fan, Ben
Wang, Cong
Ding, Xiaolei
Zhu, Bingyao
Song, Xiaofeng
Borriss, Rainer
AmyloWiki: an integrated database for Bacillus velezensis FZB42, the model strain for plant growth-promoting Bacilli
title AmyloWiki: an integrated database for Bacillus velezensis FZB42, the model strain for plant growth-promoting Bacilli
title_full AmyloWiki: an integrated database for Bacillus velezensis FZB42, the model strain for plant growth-promoting Bacilli
title_fullStr AmyloWiki: an integrated database for Bacillus velezensis FZB42, the model strain for plant growth-promoting Bacilli
title_full_unstemmed AmyloWiki: an integrated database for Bacillus velezensis FZB42, the model strain for plant growth-promoting Bacilli
title_short AmyloWiki: an integrated database for Bacillus velezensis FZB42, the model strain for plant growth-promoting Bacilli
title_sort amylowiki: an integrated database for bacillus velezensis fzb42, the model strain for plant growth-promoting bacilli
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6585148/
https://www.ncbi.nlm.nih.gov/pubmed/31219564
http://dx.doi.org/10.1093/database/baz071
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