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Feasibility of lung cancer prediction from low-dose CT scan and smoking factors using causal models

INTRODUCTION: Low-dose CT (LDCT) is currently used in lung cancer screening of high-risk populations for early lung cancer diagnosis. However, 96% of individuals with detected nodules are false positives. METHODS: In order to develop an efficient early lung cancer predictor from clinical, demographi...

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Autores principales: Raghu, Vineet K, Zhao, Wei, Pu, Jiantao, Leader, Joseph K, Wang, Renwei, Herman, James, Yuan, Jian-Min, Benos, Panayiotis V, Wilson, David O
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BMJ Publishing Group 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6585306/
https://www.ncbi.nlm.nih.gov/pubmed/30862725
http://dx.doi.org/10.1136/thoraxjnl-2018-212638
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author Raghu, Vineet K
Zhao, Wei
Pu, Jiantao
Leader, Joseph K
Wang, Renwei
Herman, James
Yuan, Jian-Min
Benos, Panayiotis V
Wilson, David O
author_facet Raghu, Vineet K
Zhao, Wei
Pu, Jiantao
Leader, Joseph K
Wang, Renwei
Herman, James
Yuan, Jian-Min
Benos, Panayiotis V
Wilson, David O
author_sort Raghu, Vineet K
collection PubMed
description INTRODUCTION: Low-dose CT (LDCT) is currently used in lung cancer screening of high-risk populations for early lung cancer diagnosis. However, 96% of individuals with detected nodules are false positives. METHODS: In order to develop an efficient early lung cancer predictor from clinical, demographic and LDCT features, we studied a total of 218 subjects with lung cancer or benign nodules. Probabilistic graphical models (PGMs) were used to integrate demographics, clinical data and LDCT features from 92 subjects (training cohort) from the Pittsburgh Lung Screening Study cohort. RESULTS: Learnt PGMs identified three variables directly (causally) linked to malignant nodules and the largest benign nodule and used them to build the Lung Cancer Causal Model (LCCM), which was validated in a separate cohort of 126 subjects. Nodule and vessel numbers and years since the subject quit smoking were sufficient to discriminate malignant from benign nodules. Comparison with existing predictors in the training and validation cohorts showed that (1) incorporating LDCT scan features greatly enhances predictive accuracy; and (2) LCCM improves cancer detection over existing methods, including the Brock parsimonious model (p<0.001). Notably, the number of surrounding vessels, a feature not previously used in predictive models, significantly improves predictive efficiency. Based on the validation cohort results, LCCM is able to identify 30% of the benign nodules without risk of misclassifying cancer nodules. DISCUSSION: LCCM shows promise as a lung cancer predictor as it is significantly improved over existing models. Validated in a larger, prospective study, it may help reduce unnecessary follow-up visits and procedures.
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spelling pubmed-65853062019-07-05 Feasibility of lung cancer prediction from low-dose CT scan and smoking factors using causal models Raghu, Vineet K Zhao, Wei Pu, Jiantao Leader, Joseph K Wang, Renwei Herman, James Yuan, Jian-Min Benos, Panayiotis V Wilson, David O Thorax Lung Cancer INTRODUCTION: Low-dose CT (LDCT) is currently used in lung cancer screening of high-risk populations for early lung cancer diagnosis. However, 96% of individuals with detected nodules are false positives. METHODS: In order to develop an efficient early lung cancer predictor from clinical, demographic and LDCT features, we studied a total of 218 subjects with lung cancer or benign nodules. Probabilistic graphical models (PGMs) were used to integrate demographics, clinical data and LDCT features from 92 subjects (training cohort) from the Pittsburgh Lung Screening Study cohort. RESULTS: Learnt PGMs identified three variables directly (causally) linked to malignant nodules and the largest benign nodule and used them to build the Lung Cancer Causal Model (LCCM), which was validated in a separate cohort of 126 subjects. Nodule and vessel numbers and years since the subject quit smoking were sufficient to discriminate malignant from benign nodules. Comparison with existing predictors in the training and validation cohorts showed that (1) incorporating LDCT scan features greatly enhances predictive accuracy; and (2) LCCM improves cancer detection over existing methods, including the Brock parsimonious model (p<0.001). Notably, the number of surrounding vessels, a feature not previously used in predictive models, significantly improves predictive efficiency. Based on the validation cohort results, LCCM is able to identify 30% of the benign nodules without risk of misclassifying cancer nodules. DISCUSSION: LCCM shows promise as a lung cancer predictor as it is significantly improved over existing models. Validated in a larger, prospective study, it may help reduce unnecessary follow-up visits and procedures. BMJ Publishing Group 2019-07 2019-03-12 /pmc/articles/PMC6585306/ /pubmed/30862725 http://dx.doi.org/10.1136/thoraxjnl-2018-212638 Text en © Author(s) (or their employer(s)) 2019. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/.
spellingShingle Lung Cancer
Raghu, Vineet K
Zhao, Wei
Pu, Jiantao
Leader, Joseph K
Wang, Renwei
Herman, James
Yuan, Jian-Min
Benos, Panayiotis V
Wilson, David O
Feasibility of lung cancer prediction from low-dose CT scan and smoking factors using causal models
title Feasibility of lung cancer prediction from low-dose CT scan and smoking factors using causal models
title_full Feasibility of lung cancer prediction from low-dose CT scan and smoking factors using causal models
title_fullStr Feasibility of lung cancer prediction from low-dose CT scan and smoking factors using causal models
title_full_unstemmed Feasibility of lung cancer prediction from low-dose CT scan and smoking factors using causal models
title_short Feasibility of lung cancer prediction from low-dose CT scan and smoking factors using causal models
title_sort feasibility of lung cancer prediction from low-dose ct scan and smoking factors using causal models
topic Lung Cancer
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6585306/
https://www.ncbi.nlm.nih.gov/pubmed/30862725
http://dx.doi.org/10.1136/thoraxjnl-2018-212638
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