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stk: A python toolkit for supramolecular assembly
A tool for the automated assembly, molecular optimization and property calculation of supramolecular materials is presented. stk is a modular, extensible and open‐source Python library that provides a simple Python API and integration with third party computational codes. stk currently supports the...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6585955/ https://www.ncbi.nlm.nih.gov/pubmed/30247770 http://dx.doi.org/10.1002/jcc.25377 |
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author | Turcani, Lukas Berardo, Enrico Jelfs, Kim E. |
author_facet | Turcani, Lukas Berardo, Enrico Jelfs, Kim E. |
author_sort | Turcani, Lukas |
collection | PubMed |
description | A tool for the automated assembly, molecular optimization and property calculation of supramolecular materials is presented. stk is a modular, extensible and open‐source Python library that provides a simple Python API and integration with third party computational codes. stk currently supports the construction of linear polymers, small linear oligomers, organic cages in multiple topologies and covalent organic frameworks (COFs) in multiple framework topologies, but is designed to be easy to extend to new, unrelated, supramolecules or new topologies. Extension to metal–organic frameworks (MOFs), metallocycles or supramolecules, such as catenanes, would be straightforward. Through integration with third party codes, stk offers the user the opportunity to explore the potential energy landscape of the assembled supramolecule and then calculate the supramolecule's structural features and properties. stk provides support for high‐throughput screening of large batches of supramolecules at a time. The source code of the program can be found at https://github.com/supramolecular-toolkit/stk. © 2018 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc. |
format | Online Article Text |
id | pubmed-6585955 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-65859552019-06-27 stk: A python toolkit for supramolecular assembly Turcani, Lukas Berardo, Enrico Jelfs, Kim E. J Comput Chem Software News and Updates A tool for the automated assembly, molecular optimization and property calculation of supramolecular materials is presented. stk is a modular, extensible and open‐source Python library that provides a simple Python API and integration with third party computational codes. stk currently supports the construction of linear polymers, small linear oligomers, organic cages in multiple topologies and covalent organic frameworks (COFs) in multiple framework topologies, but is designed to be easy to extend to new, unrelated, supramolecules or new topologies. Extension to metal–organic frameworks (MOFs), metallocycles or supramolecules, such as catenanes, would be straightforward. Through integration with third party codes, stk offers the user the opportunity to explore the potential energy landscape of the assembled supramolecule and then calculate the supramolecule's structural features and properties. stk provides support for high‐throughput screening of large batches of supramolecules at a time. The source code of the program can be found at https://github.com/supramolecular-toolkit/stk. © 2018 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc. John Wiley & Sons, Inc. 2018-09-24 2018-09-05 /pmc/articles/PMC6585955/ /pubmed/30247770 http://dx.doi.org/10.1002/jcc.25377 Text en © 2018 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software News and Updates Turcani, Lukas Berardo, Enrico Jelfs, Kim E. stk: A python toolkit for supramolecular assembly |
title |
stk: A python toolkit for supramolecular assembly |
title_full |
stk: A python toolkit for supramolecular assembly |
title_fullStr |
stk: A python toolkit for supramolecular assembly |
title_full_unstemmed |
stk: A python toolkit for supramolecular assembly |
title_short |
stk: A python toolkit for supramolecular assembly |
title_sort | stk: a python toolkit for supramolecular assembly |
topic | Software News and Updates |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6585955/ https://www.ncbi.nlm.nih.gov/pubmed/30247770 http://dx.doi.org/10.1002/jcc.25377 |
work_keys_str_mv | AT turcanilukas stkapythontoolkitforsupramolecularassembly AT berardoenrico stkapythontoolkitforsupramolecularassembly AT jelfskime stkapythontoolkitforsupramolecularassembly |