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stk: A python toolkit for supramolecular assembly

A tool for the automated assembly, molecular optimization and property calculation of supramolecular materials is presented. stk is a modular, extensible and open‐source Python library that provides a simple Python API and integration with third party computational codes. stk currently supports the...

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Detalles Bibliográficos
Autores principales: Turcani, Lukas, Berardo, Enrico, Jelfs, Kim E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6585955/
https://www.ncbi.nlm.nih.gov/pubmed/30247770
http://dx.doi.org/10.1002/jcc.25377
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author Turcani, Lukas
Berardo, Enrico
Jelfs, Kim E.
author_facet Turcani, Lukas
Berardo, Enrico
Jelfs, Kim E.
author_sort Turcani, Lukas
collection PubMed
description A tool for the automated assembly, molecular optimization and property calculation of supramolecular materials is presented. stk is a modular, extensible and open‐source Python library that provides a simple Python API and integration with third party computational codes. stk currently supports the construction of linear polymers, small linear oligomers, organic cages in multiple topologies and covalent organic frameworks (COFs) in multiple framework topologies, but is designed to be easy to extend to new, unrelated, supramolecules or new topologies. Extension to metal–organic frameworks (MOFs), metallocycles or supramolecules, such as catenanes, would be straightforward. Through integration with third party codes, stk offers the user the opportunity to explore the potential energy landscape of the assembled supramolecule and then calculate the supramolecule's structural features and properties. stk provides support for high‐throughput screening of large batches of supramolecules at a time. The source code of the program can be found at https://github.com/supramolecular-toolkit/stk. © 2018 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc.
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spelling pubmed-65859552019-06-27 stk: A python toolkit for supramolecular assembly Turcani, Lukas Berardo, Enrico Jelfs, Kim E. J Comput Chem Software News and Updates A tool for the automated assembly, molecular optimization and property calculation of supramolecular materials is presented. stk is a modular, extensible and open‐source Python library that provides a simple Python API and integration with third party computational codes. stk currently supports the construction of linear polymers, small linear oligomers, organic cages in multiple topologies and covalent organic frameworks (COFs) in multiple framework topologies, but is designed to be easy to extend to new, unrelated, supramolecules or new topologies. Extension to metal–organic frameworks (MOFs), metallocycles or supramolecules, such as catenanes, would be straightforward. Through integration with third party codes, stk offers the user the opportunity to explore the potential energy landscape of the assembled supramolecule and then calculate the supramolecule's structural features and properties. stk provides support for high‐throughput screening of large batches of supramolecules at a time. The source code of the program can be found at https://github.com/supramolecular-toolkit/stk. © 2018 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc. John Wiley & Sons, Inc. 2018-09-24 2018-09-05 /pmc/articles/PMC6585955/ /pubmed/30247770 http://dx.doi.org/10.1002/jcc.25377 Text en © 2018 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software News and Updates
Turcani, Lukas
Berardo, Enrico
Jelfs, Kim E.
stk: A python toolkit for supramolecular assembly
title stk: A python toolkit for supramolecular assembly
title_full stk: A python toolkit for supramolecular assembly
title_fullStr stk: A python toolkit for supramolecular assembly
title_full_unstemmed stk: A python toolkit for supramolecular assembly
title_short stk: A python toolkit for supramolecular assembly
title_sort stk: a python toolkit for supramolecular assembly
topic Software News and Updates
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6585955/
https://www.ncbi.nlm.nih.gov/pubmed/30247770
http://dx.doi.org/10.1002/jcc.25377
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