Cargando…
PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning
BACKGROUND: Phages and plasmids are the major components of mobile genetic elements, and fragments from such elements generally co-exist with chromosome-derived fragments in sequenced metagenomic data. However, there is a lack of efficient methods that can simultaneously identify phages and plasmids...
Autores principales: | Fang, Zhencheng, Tan, Jie, Wu, Shufang, Li, Mo, Xu, Congmin, Xie, Zhongjie, Zhu, Huaiqiu |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6586199/ https://www.ncbi.nlm.nih.gov/pubmed/31220250 http://dx.doi.org/10.1093/gigascience/giz066 |
Ejemplares similares
-
HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes
por: Tan, Jie, et al.
Publicado: (2021) -
PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning
por: Fang, Zhencheng, et al.
Publicado: (2020) -
DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
por: Wu, Shufang, et al.
Publicado: (2021) -
DeePVP: Identification and classification of phage virion proteins using deep learning
por: Fang, Zhencheng, et al.
Publicado: (2022) -
More Positive or More Negative? Metagenomic Analysis Reveals Roles of Virome in Human Disease-Related Gut Microbiome
por: Li, Mo, et al.
Publicado: (2022)