Cargando…
Delimiting a species’ geographic range using posterior sampling and computational geometry
Accurate delimitation of the geographic range of a species is important for control of biological invasions, conservation of threatened species, and understanding species range dynamics under environmental change. However, estimating range boundaries is challenging because monitoring methods are imp...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6586837/ https://www.ncbi.nlm.nih.gov/pubmed/31222114 http://dx.doi.org/10.1038/s41598-019-45318-5 |
_version_ | 1783428953800704000 |
---|---|
author | Keith, Jonathan M. Spring, Daniel Kompas, Tom |
author_facet | Keith, Jonathan M. Spring, Daniel Kompas, Tom |
author_sort | Keith, Jonathan M. |
collection | PubMed |
description | Accurate delimitation of the geographic range of a species is important for control of biological invasions, conservation of threatened species, and understanding species range dynamics under environmental change. However, estimating range boundaries is challenging because monitoring methods are imperfect, the area that might contain individuals is often incompletely surveyed, and species may have patchy distributions. In these circumstances, large areas can be surveyed without finding individuals despite occupancy extending beyond surveyed areas, resulting in underestimation of range limits. We developed a delimitation method that can be applied with imperfect survey data and patchy distributions. The approach is to construct polygons indicative of the geographic range of a species. Each polygon is associated with a specific probability such that each interior point of the polygon has at least that posterior probability of being interior to the true boundary according to a Bayesian model. The method uses the posterior distribution of latent quantities derived from an agent-based Bayesian model and calculates the posterior distribution of the range as a derived quantity from Markov chain Monte Carlo samples. An application of this method described here informed the Australian campaign to eradicate red imported fire ants (Solenopsis invicta). |
format | Online Article Text |
id | pubmed-6586837 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-65868372019-06-27 Delimiting a species’ geographic range using posterior sampling and computational geometry Keith, Jonathan M. Spring, Daniel Kompas, Tom Sci Rep Article Accurate delimitation of the geographic range of a species is important for control of biological invasions, conservation of threatened species, and understanding species range dynamics under environmental change. However, estimating range boundaries is challenging because monitoring methods are imperfect, the area that might contain individuals is often incompletely surveyed, and species may have patchy distributions. In these circumstances, large areas can be surveyed without finding individuals despite occupancy extending beyond surveyed areas, resulting in underestimation of range limits. We developed a delimitation method that can be applied with imperfect survey data and patchy distributions. The approach is to construct polygons indicative of the geographic range of a species. Each polygon is associated with a specific probability such that each interior point of the polygon has at least that posterior probability of being interior to the true boundary according to a Bayesian model. The method uses the posterior distribution of latent quantities derived from an agent-based Bayesian model and calculates the posterior distribution of the range as a derived quantity from Markov chain Monte Carlo samples. An application of this method described here informed the Australian campaign to eradicate red imported fire ants (Solenopsis invicta). Nature Publishing Group UK 2019-06-20 /pmc/articles/PMC6586837/ /pubmed/31222114 http://dx.doi.org/10.1038/s41598-019-45318-5 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Keith, Jonathan M. Spring, Daniel Kompas, Tom Delimiting a species’ geographic range using posterior sampling and computational geometry |
title | Delimiting a species’ geographic range using posterior sampling and computational geometry |
title_full | Delimiting a species’ geographic range using posterior sampling and computational geometry |
title_fullStr | Delimiting a species’ geographic range using posterior sampling and computational geometry |
title_full_unstemmed | Delimiting a species’ geographic range using posterior sampling and computational geometry |
title_short | Delimiting a species’ geographic range using posterior sampling and computational geometry |
title_sort | delimiting a species’ geographic range using posterior sampling and computational geometry |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6586837/ https://www.ncbi.nlm.nih.gov/pubmed/31222114 http://dx.doi.org/10.1038/s41598-019-45318-5 |
work_keys_str_mv | AT keithjonathanm delimitingaspeciesgeographicrangeusingposteriorsamplingandcomputationalgeometry AT springdaniel delimitingaspeciesgeographicrangeusingposteriorsamplingandcomputationalgeometry AT kompastom delimitingaspeciesgeographicrangeusingposteriorsamplingandcomputationalgeometry |