Cargando…
DL-3-Aminoisobutyric acid: vibrational, NBO and AIM analysis of N–H⋯O bonded-zwitterionic dimer model
A zwitterionic dimer model constructed of inter-molecular –N–H⋯O bonding has been proposed for the solid sample of DL-3-Aminoisobutyric acid consistent with IR absorption and Raman spectral features measured in the 3500–400/50 cm(−1). This zwitterionic dimer model in water as solvent has been comput...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6587070/ https://www.ncbi.nlm.nih.gov/pubmed/31286081 http://dx.doi.org/10.1016/j.heliyon.2019.e01933 |
_version_ | 1783428999783907328 |
---|---|
author | Yalagi, Shashikala Tonannavar, Jagdish Tonannavar, Jayashree |
author_facet | Yalagi, Shashikala Tonannavar, Jagdish Tonannavar, Jayashree |
author_sort | Yalagi, Shashikala |
collection | PubMed |
description | A zwitterionic dimer model constructed of inter-molecular –N–H⋯O bonding has been proposed for the solid sample of DL-3-Aminoisobutyric acid consistent with IR absorption and Raman spectral features measured in the 3500–400/50 cm(−1). This zwitterionic dimer model in water as solvent has been computed at B3LYP/6–311++G(d,p) and B3LYP-D3/6–311++G(d,p) levels including Grimme's dispersion correction associated with the –N–H⋯O interaction and SCRF-SMD method. Of the several possible monomer and dimer conformational structures, the most stable dimer constructed of two zwitterion monomer units has produced vibrational modes due to the –NH(3)(+) cation and –CO(2)‾ anion involved in the –N–H⋯O bonding in fair agreement with the observed broad but composite IR modal features near the 3500–2000 cm(−1). Except for the frequency of asymmetric stretching mode of the –NH(3)(+) cation, its symmetric and bending modes agree with the observed values. As for the –CO(2)‾ anion, the frequencies of all of its modes are in good agreement with the experiment. Natural bond orbital (NBO), molecular electrostatic potential (MEP), atoms-in-molecules (AIM) and non-covalent interaction (NCI) analyses have been used to understand electronic characterization of the –N–H⋯O bonding. |
format | Online Article Text |
id | pubmed-6587070 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-65870702019-07-08 DL-3-Aminoisobutyric acid: vibrational, NBO and AIM analysis of N–H⋯O bonded-zwitterionic dimer model Yalagi, Shashikala Tonannavar, Jagdish Tonannavar, Jayashree Heliyon Article A zwitterionic dimer model constructed of inter-molecular –N–H⋯O bonding has been proposed for the solid sample of DL-3-Aminoisobutyric acid consistent with IR absorption and Raman spectral features measured in the 3500–400/50 cm(−1). This zwitterionic dimer model in water as solvent has been computed at B3LYP/6–311++G(d,p) and B3LYP-D3/6–311++G(d,p) levels including Grimme's dispersion correction associated with the –N–H⋯O interaction and SCRF-SMD method. Of the several possible monomer and dimer conformational structures, the most stable dimer constructed of two zwitterion monomer units has produced vibrational modes due to the –NH(3)(+) cation and –CO(2)‾ anion involved in the –N–H⋯O bonding in fair agreement with the observed broad but composite IR modal features near the 3500–2000 cm(−1). Except for the frequency of asymmetric stretching mode of the –NH(3)(+) cation, its symmetric and bending modes agree with the observed values. As for the –CO(2)‾ anion, the frequencies of all of its modes are in good agreement with the experiment. Natural bond orbital (NBO), molecular electrostatic potential (MEP), atoms-in-molecules (AIM) and non-covalent interaction (NCI) analyses have been used to understand electronic characterization of the –N–H⋯O bonding. Elsevier 2019-06-18 /pmc/articles/PMC6587070/ /pubmed/31286081 http://dx.doi.org/10.1016/j.heliyon.2019.e01933 Text en © 2019 The Authors. Published by Elsevier Ltd. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Yalagi, Shashikala Tonannavar, Jagdish Tonannavar, Jayashree DL-3-Aminoisobutyric acid: vibrational, NBO and AIM analysis of N–H⋯O bonded-zwitterionic dimer model |
title | DL-3-Aminoisobutyric acid: vibrational, NBO and AIM analysis of N–H⋯O bonded-zwitterionic dimer model |
title_full | DL-3-Aminoisobutyric acid: vibrational, NBO and AIM analysis of N–H⋯O bonded-zwitterionic dimer model |
title_fullStr | DL-3-Aminoisobutyric acid: vibrational, NBO and AIM analysis of N–H⋯O bonded-zwitterionic dimer model |
title_full_unstemmed | DL-3-Aminoisobutyric acid: vibrational, NBO and AIM analysis of N–H⋯O bonded-zwitterionic dimer model |
title_short | DL-3-Aminoisobutyric acid: vibrational, NBO and AIM analysis of N–H⋯O bonded-zwitterionic dimer model |
title_sort | dl-3-aminoisobutyric acid: vibrational, nbo and aim analysis of n–h⋯o bonded-zwitterionic dimer model |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6587070/ https://www.ncbi.nlm.nih.gov/pubmed/31286081 http://dx.doi.org/10.1016/j.heliyon.2019.e01933 |
work_keys_str_mv | AT yalagishashikala dl3aminoisobutyricacidvibrationalnboandaimanalysisofnhobondedzwitterionicdimermodel AT tonannavarjagdish dl3aminoisobutyricacidvibrationalnboandaimanalysisofnhobondedzwitterionicdimermodel AT tonannavarjayashree dl3aminoisobutyricacidvibrationalnboandaimanalysisofnhobondedzwitterionicdimermodel |