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The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experiments

The Genome Analysis Toolkit (GATK) is a popular set of programs for discovering and genotyping variants from next-generation sequencing data. The current GATK recommendation for RNA sequencing (RNA-seq) is to perform variant calling from individual samples, with the drawback that only variable posit...

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Detalles Bibliográficos
Autores principales:	Brouard, Jean-Simon, Schenkel, Flavio, Marete, Andrew, Bissonnette, Nathalie
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2019
Materias:	Short Report
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6587293/ https://www.ncbi.nlm.nih.gov/pubmed/31249686 http://dx.doi.org/10.1186/s40104-019-0359-0

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