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A Transfer Learning Approach for Malignant Prostate Lesion Detection on Multiparametric MRI

PURPOSE: In prostate focal therapy, it is important to accurately localize malignant lesions in order to increase biological effect of the tumor region while achieving a reduction in dose to noncancerous tissue. In this work, we proposed a transfer learning–based deep learning approach, for classifi...

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Autores principales: Chen, Quan, Hu, Shiliang, Long, Peiran, Lu, Fang, Shi, Yujie, Li, Yunpeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6589968/
https://www.ncbi.nlm.nih.gov/pubmed/31221034
http://dx.doi.org/10.1177/1533033819858363
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author Chen, Quan
Hu, Shiliang
Long, Peiran
Lu, Fang
Shi, Yujie
Li, Yunpeng
author_facet Chen, Quan
Hu, Shiliang
Long, Peiran
Lu, Fang
Shi, Yujie
Li, Yunpeng
author_sort Chen, Quan
collection PubMed
description PURPOSE: In prostate focal therapy, it is important to accurately localize malignant lesions in order to increase biological effect of the tumor region while achieving a reduction in dose to noncancerous tissue. In this work, we proposed a transfer learning–based deep learning approach, for classification of prostate lesions in multiparametric magnetic resonance imaging images. METHODS: Magnetic resonance imaging images were preprocessed to remove bias artifact and normalize the data. Two state-of-the-art deep convolutional neural network models, InceptionV3 and VGG-16, were pretrained on ImageNet data set and retuned on the multiparametric magnetic resonance imaging data set. As lesion appearances differ by the prostate zone that it resides in, separate models were trained. Ensembling was performed on each prostate zone to improve area under the curve. In addition, the predictions from lesions on each prostate zone were scaled separately to increase the area under the curve for all lesions combined. RESULTS: The models were tuned to produce the highest area under the curve on validation data set. When it was applied to the unseen test data set, the transferred InceptionV3 model achieved an area under the curve of 0.81 and the transferred VGG-16 model achieved an area under the curve of 0.83. This was the third best score among the 72 methods from 33 participating groups in ProstateX competition. CONCLUSION: The transfer learning approach is a promising method for prostate cancer detection on multiparametric magnetic resonance imaging images. Features learned from ImageNet data set can be useful for medical images.
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spelling pubmed-65899682019-06-28 A Transfer Learning Approach for Malignant Prostate Lesion Detection on Multiparametric MRI Chen, Quan Hu, Shiliang Long, Peiran Lu, Fang Shi, Yujie Li, Yunpeng Technol Cancer Res Treat Artificial Intelligence Based Treatment Planning for Radiotherapy PURPOSE: In prostate focal therapy, it is important to accurately localize malignant lesions in order to increase biological effect of the tumor region while achieving a reduction in dose to noncancerous tissue. In this work, we proposed a transfer learning–based deep learning approach, for classification of prostate lesions in multiparametric magnetic resonance imaging images. METHODS: Magnetic resonance imaging images were preprocessed to remove bias artifact and normalize the data. Two state-of-the-art deep convolutional neural network models, InceptionV3 and VGG-16, were pretrained on ImageNet data set and retuned on the multiparametric magnetic resonance imaging data set. As lesion appearances differ by the prostate zone that it resides in, separate models were trained. Ensembling was performed on each prostate zone to improve area under the curve. In addition, the predictions from lesions on each prostate zone were scaled separately to increase the area under the curve for all lesions combined. RESULTS: The models were tuned to produce the highest area under the curve on validation data set. When it was applied to the unseen test data set, the transferred InceptionV3 model achieved an area under the curve of 0.81 and the transferred VGG-16 model achieved an area under the curve of 0.83. This was the third best score among the 72 methods from 33 participating groups in ProstateX competition. CONCLUSION: The transfer learning approach is a promising method for prostate cancer detection on multiparametric magnetic resonance imaging images. Features learned from ImageNet data set can be useful for medical images. SAGE Publications 2019-06-20 /pmc/articles/PMC6589968/ /pubmed/31221034 http://dx.doi.org/10.1177/1533033819858363 Text en © The Author(s) 2019 http://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (http://www.creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Artificial Intelligence Based Treatment Planning for Radiotherapy
Chen, Quan
Hu, Shiliang
Long, Peiran
Lu, Fang
Shi, Yujie
Li, Yunpeng
A Transfer Learning Approach for Malignant Prostate Lesion Detection on Multiparametric MRI
title A Transfer Learning Approach for Malignant Prostate Lesion Detection on Multiparametric MRI
title_full A Transfer Learning Approach for Malignant Prostate Lesion Detection on Multiparametric MRI
title_fullStr A Transfer Learning Approach for Malignant Prostate Lesion Detection on Multiparametric MRI
title_full_unstemmed A Transfer Learning Approach for Malignant Prostate Lesion Detection on Multiparametric MRI
title_short A Transfer Learning Approach for Malignant Prostate Lesion Detection on Multiparametric MRI
title_sort transfer learning approach for malignant prostate lesion detection on multiparametric mri
topic Artificial Intelligence Based Treatment Planning for Radiotherapy
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6589968/
https://www.ncbi.nlm.nih.gov/pubmed/31221034
http://dx.doi.org/10.1177/1533033819858363
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