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Description and classification of bivalve mollusks hemocytes: a computational approach

The fractal formalism in combination with linear image analysis enables statistically significant description and classification of “irregular” (in terms of Euclidean geometry) shapes, such as, outlines of in vitro flattened cells. We developed an optimal model for classifying bivalve Spisula sachal...

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Autores principales: Karetin, Yuriy A., Kalitnik, Aleksandra A., Safonova, Alina E., Cicinskas, Eduardas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6590393/
https://www.ncbi.nlm.nih.gov/pubmed/31275741
http://dx.doi.org/10.7717/peerj.7056
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author Karetin, Yuriy A.
Kalitnik, Aleksandra A.
Safonova, Alina E.
Cicinskas, Eduardas
author_facet Karetin, Yuriy A.
Kalitnik, Aleksandra A.
Safonova, Alina E.
Cicinskas, Eduardas
author_sort Karetin, Yuriy A.
collection PubMed
description The fractal formalism in combination with linear image analysis enables statistically significant description and classification of “irregular” (in terms of Euclidean geometry) shapes, such as, outlines of in vitro flattened cells. We developed an optimal model for classifying bivalve Spisula sachalinensis and Callista brevisiphonata immune cells, based on evaluating their linear and non-linear morphological features: size characteristics (area, perimeter), various parameters of cell bounding circle, convex hull, cell symmetry, roundness, and a number of fractal dimensions and lacunarities evaluating the spatial complexity of cells. Proposed classification model is based on Ward’s clustering method, loaded with highest multimodality index factors. This classification scheme groups cells into three morphological types, which can be distinguished both visually and by several linear and quasi-fractal parameters.
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spelling pubmed-65903932019-07-02 Description and classification of bivalve mollusks hemocytes: a computational approach Karetin, Yuriy A. Kalitnik, Aleksandra A. Safonova, Alina E. Cicinskas, Eduardas PeerJ Bioinformatics The fractal formalism in combination with linear image analysis enables statistically significant description and classification of “irregular” (in terms of Euclidean geometry) shapes, such as, outlines of in vitro flattened cells. We developed an optimal model for classifying bivalve Spisula sachalinensis and Callista brevisiphonata immune cells, based on evaluating their linear and non-linear morphological features: size characteristics (area, perimeter), various parameters of cell bounding circle, convex hull, cell symmetry, roundness, and a number of fractal dimensions and lacunarities evaluating the spatial complexity of cells. Proposed classification model is based on Ward’s clustering method, loaded with highest multimodality index factors. This classification scheme groups cells into three morphological types, which can be distinguished both visually and by several linear and quasi-fractal parameters. PeerJ Inc. 2019-06-21 /pmc/articles/PMC6590393/ /pubmed/31275741 http://dx.doi.org/10.7717/peerj.7056 Text en ©2019 Karetin et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Karetin, Yuriy A.
Kalitnik, Aleksandra A.
Safonova, Alina E.
Cicinskas, Eduardas
Description and classification of bivalve mollusks hemocytes: a computational approach
title Description and classification of bivalve mollusks hemocytes: a computational approach
title_full Description and classification of bivalve mollusks hemocytes: a computational approach
title_fullStr Description and classification of bivalve mollusks hemocytes: a computational approach
title_full_unstemmed Description and classification of bivalve mollusks hemocytes: a computational approach
title_short Description and classification of bivalve mollusks hemocytes: a computational approach
title_sort description and classification of bivalve mollusks hemocytes: a computational approach
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6590393/
https://www.ncbi.nlm.nih.gov/pubmed/31275741
http://dx.doi.org/10.7717/peerj.7056
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