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Description and classification of bivalve mollusks hemocytes: a computational approach
The fractal formalism in combination with linear image analysis enables statistically significant description and classification of “irregular” (in terms of Euclidean geometry) shapes, such as, outlines of in vitro flattened cells. We developed an optimal model for classifying bivalve Spisula sachal...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6590393/ https://www.ncbi.nlm.nih.gov/pubmed/31275741 http://dx.doi.org/10.7717/peerj.7056 |
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author | Karetin, Yuriy A. Kalitnik, Aleksandra A. Safonova, Alina E. Cicinskas, Eduardas |
author_facet | Karetin, Yuriy A. Kalitnik, Aleksandra A. Safonova, Alina E. Cicinskas, Eduardas |
author_sort | Karetin, Yuriy A. |
collection | PubMed |
description | The fractal formalism in combination with linear image analysis enables statistically significant description and classification of “irregular” (in terms of Euclidean geometry) shapes, such as, outlines of in vitro flattened cells. We developed an optimal model for classifying bivalve Spisula sachalinensis and Callista brevisiphonata immune cells, based on evaluating their linear and non-linear morphological features: size characteristics (area, perimeter), various parameters of cell bounding circle, convex hull, cell symmetry, roundness, and a number of fractal dimensions and lacunarities evaluating the spatial complexity of cells. Proposed classification model is based on Ward’s clustering method, loaded with highest multimodality index factors. This classification scheme groups cells into three morphological types, which can be distinguished both visually and by several linear and quasi-fractal parameters. |
format | Online Article Text |
id | pubmed-6590393 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-65903932019-07-02 Description and classification of bivalve mollusks hemocytes: a computational approach Karetin, Yuriy A. Kalitnik, Aleksandra A. Safonova, Alina E. Cicinskas, Eduardas PeerJ Bioinformatics The fractal formalism in combination with linear image analysis enables statistically significant description and classification of “irregular” (in terms of Euclidean geometry) shapes, such as, outlines of in vitro flattened cells. We developed an optimal model for classifying bivalve Spisula sachalinensis and Callista brevisiphonata immune cells, based on evaluating their linear and non-linear morphological features: size characteristics (area, perimeter), various parameters of cell bounding circle, convex hull, cell symmetry, roundness, and a number of fractal dimensions and lacunarities evaluating the spatial complexity of cells. Proposed classification model is based on Ward’s clustering method, loaded with highest multimodality index factors. This classification scheme groups cells into three morphological types, which can be distinguished both visually and by several linear and quasi-fractal parameters. PeerJ Inc. 2019-06-21 /pmc/articles/PMC6590393/ /pubmed/31275741 http://dx.doi.org/10.7717/peerj.7056 Text en ©2019 Karetin et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Karetin, Yuriy A. Kalitnik, Aleksandra A. Safonova, Alina E. Cicinskas, Eduardas Description and classification of bivalve mollusks hemocytes: a computational approach |
title | Description and classification of bivalve mollusks hemocytes: a computational approach |
title_full | Description and classification of bivalve mollusks hemocytes: a computational approach |
title_fullStr | Description and classification of bivalve mollusks hemocytes: a computational approach |
title_full_unstemmed | Description and classification of bivalve mollusks hemocytes: a computational approach |
title_short | Description and classification of bivalve mollusks hemocytes: a computational approach |
title_sort | description and classification of bivalve mollusks hemocytes: a computational approach |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6590393/ https://www.ncbi.nlm.nih.gov/pubmed/31275741 http://dx.doi.org/10.7717/peerj.7056 |
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