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Genome wide identification and comparative analysis of glutathione transferases (GST) family genes in Brassica napus
Glutathione transferases (GSTs) are multifunctional enzymes that play important roles in plant development and responses to biotic and abiotic stress. However, a systematic analysis of GST family members in Brassica napus has not yet been reported. In this study, we identified 179 full-length GST ge...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6591421/ https://www.ncbi.nlm.nih.gov/pubmed/31235772 http://dx.doi.org/10.1038/s41598-019-45744-5 |
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author | Wei, Lijuan Zhu, Yan Liu, Ruiying Zhang, Aoxiang Zhu, Meicheng Xu, Wen Lin, Ai Lu, Kun Li, Jiana |
author_facet | Wei, Lijuan Zhu, Yan Liu, Ruiying Zhang, Aoxiang Zhu, Meicheng Xu, Wen Lin, Ai Lu, Kun Li, Jiana |
author_sort | Wei, Lijuan |
collection | PubMed |
description | Glutathione transferases (GSTs) are multifunctional enzymes that play important roles in plant development and responses to biotic and abiotic stress. However, a systematic analysis of GST family members in Brassica napus has not yet been reported. In this study, we identified 179 full-length GST genes in B. napus, 44.2% of which are clustered on various chromosomes. In addition, we identified 141 duplicated GST gene pairs in B. napus. Molecular evolutionary analysis showed that speciation and whole-genome triplication played important roles in the divergence of the B. napus GST duplicated genes. Transcriptome analysis of 21 tissues at different developmental stages showed that 47.6% of duplicated GST gene pairs have divergent expression patterns, perhaps due to structural divergence. We constructed a GST gene coexpression network with genes encoding various transcription factors (NAC, MYB, WRKY and bZIP) and identified six modules, including genes expressed during late seed development (after 40 days; BnGSTU19, BnGSTU20 and BnGSTZ1) and in the seed coat (BnGSTF6 and BnGSTF12), stamen and anther (BnGSTF8), root and stem (BnGSTU21), leaves and funiculus, as well as during the late stage of pericarp development (after 40 days; BnGSTU12 and BnGSTF2) and in the radicle during seed germination (BnGSTF14, BnGSTU1, BnGSTU28, and BnGSTZ1). These findings lay the foundation for elucidating the roles of GSTs in B. napus. |
format | Online Article Text |
id | pubmed-6591421 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-65914212019-07-02 Genome wide identification and comparative analysis of glutathione transferases (GST) family genes in Brassica napus Wei, Lijuan Zhu, Yan Liu, Ruiying Zhang, Aoxiang Zhu, Meicheng Xu, Wen Lin, Ai Lu, Kun Li, Jiana Sci Rep Article Glutathione transferases (GSTs) are multifunctional enzymes that play important roles in plant development and responses to biotic and abiotic stress. However, a systematic analysis of GST family members in Brassica napus has not yet been reported. In this study, we identified 179 full-length GST genes in B. napus, 44.2% of which are clustered on various chromosomes. In addition, we identified 141 duplicated GST gene pairs in B. napus. Molecular evolutionary analysis showed that speciation and whole-genome triplication played important roles in the divergence of the B. napus GST duplicated genes. Transcriptome analysis of 21 tissues at different developmental stages showed that 47.6% of duplicated GST gene pairs have divergent expression patterns, perhaps due to structural divergence. We constructed a GST gene coexpression network with genes encoding various transcription factors (NAC, MYB, WRKY and bZIP) and identified six modules, including genes expressed during late seed development (after 40 days; BnGSTU19, BnGSTU20 and BnGSTZ1) and in the seed coat (BnGSTF6 and BnGSTF12), stamen and anther (BnGSTF8), root and stem (BnGSTU21), leaves and funiculus, as well as during the late stage of pericarp development (after 40 days; BnGSTU12 and BnGSTF2) and in the radicle during seed germination (BnGSTF14, BnGSTU1, BnGSTU28, and BnGSTZ1). These findings lay the foundation for elucidating the roles of GSTs in B. napus. Nature Publishing Group UK 2019-06-24 /pmc/articles/PMC6591421/ /pubmed/31235772 http://dx.doi.org/10.1038/s41598-019-45744-5 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Wei, Lijuan Zhu, Yan Liu, Ruiying Zhang, Aoxiang Zhu, Meicheng Xu, Wen Lin, Ai Lu, Kun Li, Jiana Genome wide identification and comparative analysis of glutathione transferases (GST) family genes in Brassica napus |
title | Genome wide identification and comparative analysis of glutathione transferases (GST) family genes in Brassica napus |
title_full | Genome wide identification and comparative analysis of glutathione transferases (GST) family genes in Brassica napus |
title_fullStr | Genome wide identification and comparative analysis of glutathione transferases (GST) family genes in Brassica napus |
title_full_unstemmed | Genome wide identification and comparative analysis of glutathione transferases (GST) family genes in Brassica napus |
title_short | Genome wide identification and comparative analysis of glutathione transferases (GST) family genes in Brassica napus |
title_sort | genome wide identification and comparative analysis of glutathione transferases (gst) family genes in brassica napus |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6591421/ https://www.ncbi.nlm.nih.gov/pubmed/31235772 http://dx.doi.org/10.1038/s41598-019-45744-5 |
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