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Stacking sequence variations in vaterite resolved by precession electron diffraction tomography using a unified superspace model
As a metastable phase, vaterite is involved in the first step of crystallization of several carbonate-forming systems including the two stable polymorphs calcite and aragonite. Its complete structural determination would consequently shed important light to understand scaling formation and biominera...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6591425/ https://www.ncbi.nlm.nih.gov/pubmed/31235777 http://dx.doi.org/10.1038/s41598-019-45581-6 |
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author | Steciuk, Gwladys Palatinus, Lukáš Rohlíček, Jan Ouhenia, Salim Chateigner, Daniel |
author_facet | Steciuk, Gwladys Palatinus, Lukáš Rohlíček, Jan Ouhenia, Salim Chateigner, Daniel |
author_sort | Steciuk, Gwladys |
collection | PubMed |
description | As a metastable phase, vaterite is involved in the first step of crystallization of several carbonate-forming systems including the two stable polymorphs calcite and aragonite. Its complete structural determination would consequently shed important light to understand scaling formation and biomineralization processes. While vaterite’s hexagonal substructure (a(0) ~ 4.1 Å and c(0) ~ 8.5 Å) and the organization of the carbonate groups within a single layer is known, conflicting interpretations regarding the stacking sequence remain and preclude the complete understanding of the structure. To resolve the ambiguities, we performed precession electron diffraction tomography (PEDT) to collect single crystal data from 100 K to the ambient temperature. The structure was solved ab initio and described over all the temperature range using a unified modulated structure model in the superspace group C12/c1(α0γ)00 with a = a(0) = 4.086(3) Å, b = [Formula: see text] a(0) = 7.089(9) Å, c = c(0) = 8.439(9) Å, α = β = γ = 90° and q = [Formula: see text] a* + γc*. At 100 K the model presents a pure 4-layer stacking sequence with γ = [Formula: see text] whereas at the ambient temperature, ordered stacking faults are introduced leading to γ < [Formula: see text] . The model was refined against PEDT data using the dynamical refinement procedure including modulation and twinning as well as against x-ray powder data by the Rietveld refinement. |
format | Online Article Text |
id | pubmed-6591425 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-65914252019-07-02 Stacking sequence variations in vaterite resolved by precession electron diffraction tomography using a unified superspace model Steciuk, Gwladys Palatinus, Lukáš Rohlíček, Jan Ouhenia, Salim Chateigner, Daniel Sci Rep Article As a metastable phase, vaterite is involved in the first step of crystallization of several carbonate-forming systems including the two stable polymorphs calcite and aragonite. Its complete structural determination would consequently shed important light to understand scaling formation and biomineralization processes. While vaterite’s hexagonal substructure (a(0) ~ 4.1 Å and c(0) ~ 8.5 Å) and the organization of the carbonate groups within a single layer is known, conflicting interpretations regarding the stacking sequence remain and preclude the complete understanding of the structure. To resolve the ambiguities, we performed precession electron diffraction tomography (PEDT) to collect single crystal data from 100 K to the ambient temperature. The structure was solved ab initio and described over all the temperature range using a unified modulated structure model in the superspace group C12/c1(α0γ)00 with a = a(0) = 4.086(3) Å, b = [Formula: see text] a(0) = 7.089(9) Å, c = c(0) = 8.439(9) Å, α = β = γ = 90° and q = [Formula: see text] a* + γc*. At 100 K the model presents a pure 4-layer stacking sequence with γ = [Formula: see text] whereas at the ambient temperature, ordered stacking faults are introduced leading to γ < [Formula: see text] . The model was refined against PEDT data using the dynamical refinement procedure including modulation and twinning as well as against x-ray powder data by the Rietveld refinement. Nature Publishing Group UK 2019-06-24 /pmc/articles/PMC6591425/ /pubmed/31235777 http://dx.doi.org/10.1038/s41598-019-45581-6 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Steciuk, Gwladys Palatinus, Lukáš Rohlíček, Jan Ouhenia, Salim Chateigner, Daniel Stacking sequence variations in vaterite resolved by precession electron diffraction tomography using a unified superspace model |
title | Stacking sequence variations in vaterite resolved by precession electron diffraction tomography using a unified superspace model |
title_full | Stacking sequence variations in vaterite resolved by precession electron diffraction tomography using a unified superspace model |
title_fullStr | Stacking sequence variations in vaterite resolved by precession electron diffraction tomography using a unified superspace model |
title_full_unstemmed | Stacking sequence variations in vaterite resolved by precession electron diffraction tomography using a unified superspace model |
title_short | Stacking sequence variations in vaterite resolved by precession electron diffraction tomography using a unified superspace model |
title_sort | stacking sequence variations in vaterite resolved by precession electron diffraction tomography using a unified superspace model |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6591425/ https://www.ncbi.nlm.nih.gov/pubmed/31235777 http://dx.doi.org/10.1038/s41598-019-45581-6 |
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