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Performance of A Convolutional Neural Network in Screening Liquid Based Cervical Cytology Smears

CONTEXT: Cervical cancer is the second most common cancer in women. The liquid based cervical cytology (LBCC) is a useful tool of choice for screening cervical cancer. AIMS: To train a convolutional neural network (CNN) to identify abnormal foci from LBCC smears. SETTINGS AND DESIGN: We have chosen...

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Autores principales: Sanyal, Parikshit, Barui, Sanghita, Deb, Prabal, Sharma, Harish Chander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer - Medknow 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6592125/
https://www.ncbi.nlm.nih.gov/pubmed/31359913
http://dx.doi.org/10.4103/JOC.JOC_201_18
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author Sanyal, Parikshit
Barui, Sanghita
Deb, Prabal
Sharma, Harish Chander
author_facet Sanyal, Parikshit
Barui, Sanghita
Deb, Prabal
Sharma, Harish Chander
author_sort Sanyal, Parikshit
collection PubMed
description CONTEXT: Cervical cancer is the second most common cancer in women. The liquid based cervical cytology (LBCC) is a useful tool of choice for screening cervical cancer. AIMS: To train a convolutional neural network (CNN) to identify abnormal foci from LBCC smears. SETTINGS AND DESIGN: We have chosen retrospective study design from archived smears of patients undergoing screening from cervical cancer by LBCC smears. MATERIALS AND METHODS: 2816 images, each of 256 × 256 pixels, were prepared from microphotographs of these LBCC smears, which included 816 “abnormal” foci (low grade or high grade squamous intraepithelial lesion) and 2000 ‘normal’ foci (benign epithelial cells and reactive changes). The images were split into three sets, Training, Testing, and Evaluation. A convolutional neural network (CNN) was developed with the python programming language. The CNN was trained with the Training dataset; performance was assayed concurrently with the Testing dataset. Two CNN models were developed, after 20 and 10 epochs of training, respectively. The models were then run on the Evaluation dataset. STATISTICAL ANALYSIS USED: A contingency table was prepared from the original image labels and the labels predicted by the CNN. RESULTS: Combined assessment of both models yielded a sensitivity of 95.63% in detecting abnormal foci, with 79.85% specificity. The negative predictive value was high (99.19%), suggesting potential utility in screening. False positives due to overlapping cells, neutrophils, and debris was the principal difficulty met during evaluation. CONCLUSIONS: The CNN shows promise as a screening tool; however, for its use in confirmatory diagnosis, further training with a more diverse dataset will be required.
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spelling pubmed-65921252019-07-30 Performance of A Convolutional Neural Network in Screening Liquid Based Cervical Cytology Smears Sanyal, Parikshit Barui, Sanghita Deb, Prabal Sharma, Harish Chander J Cytol Original Article CONTEXT: Cervical cancer is the second most common cancer in women. The liquid based cervical cytology (LBCC) is a useful tool of choice for screening cervical cancer. AIMS: To train a convolutional neural network (CNN) to identify abnormal foci from LBCC smears. SETTINGS AND DESIGN: We have chosen retrospective study design from archived smears of patients undergoing screening from cervical cancer by LBCC smears. MATERIALS AND METHODS: 2816 images, each of 256 × 256 pixels, were prepared from microphotographs of these LBCC smears, which included 816 “abnormal” foci (low grade or high grade squamous intraepithelial lesion) and 2000 ‘normal’ foci (benign epithelial cells and reactive changes). The images were split into three sets, Training, Testing, and Evaluation. A convolutional neural network (CNN) was developed with the python programming language. The CNN was trained with the Training dataset; performance was assayed concurrently with the Testing dataset. Two CNN models were developed, after 20 and 10 epochs of training, respectively. The models were then run on the Evaluation dataset. STATISTICAL ANALYSIS USED: A contingency table was prepared from the original image labels and the labels predicted by the CNN. RESULTS: Combined assessment of both models yielded a sensitivity of 95.63% in detecting abnormal foci, with 79.85% specificity. The negative predictive value was high (99.19%), suggesting potential utility in screening. False positives due to overlapping cells, neutrophils, and debris was the principal difficulty met during evaluation. CONCLUSIONS: The CNN shows promise as a screening tool; however, for its use in confirmatory diagnosis, further training with a more diverse dataset will be required. Wolters Kluwer - Medknow 2019 /pmc/articles/PMC6592125/ /pubmed/31359913 http://dx.doi.org/10.4103/JOC.JOC_201_18 Text en Copyright: © 2019 Journal of Cytology http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms.
spellingShingle Original Article
Sanyal, Parikshit
Barui, Sanghita
Deb, Prabal
Sharma, Harish Chander
Performance of A Convolutional Neural Network in Screening Liquid Based Cervical Cytology Smears
title Performance of A Convolutional Neural Network in Screening Liquid Based Cervical Cytology Smears
title_full Performance of A Convolutional Neural Network in Screening Liquid Based Cervical Cytology Smears
title_fullStr Performance of A Convolutional Neural Network in Screening Liquid Based Cervical Cytology Smears
title_full_unstemmed Performance of A Convolutional Neural Network in Screening Liquid Based Cervical Cytology Smears
title_short Performance of A Convolutional Neural Network in Screening Liquid Based Cervical Cytology Smears
title_sort performance of a convolutional neural network in screening liquid based cervical cytology smears
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6592125/
https://www.ncbi.nlm.nih.gov/pubmed/31359913
http://dx.doi.org/10.4103/JOC.JOC_201_18
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