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Social Media Surveillance for Outbreak Projection via Transmission Models: Longitudinal Observational Study

BACKGROUND: Although dynamic models are increasingly used by decision makers as a source of insight to guide interventions in order to control communicable disease outbreaks, such models have long suffered from a risk of rapid obsolescence due to failure to keep updated with emerging epidemiological...

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Autores principales: Safarishahrbijari, Anahita, Osgood, Nathaniel D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6592486/
https://www.ncbi.nlm.nih.gov/pubmed/31199339
http://dx.doi.org/10.2196/11615
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author Safarishahrbijari, Anahita
Osgood, Nathaniel D
author_facet Safarishahrbijari, Anahita
Osgood, Nathaniel D
author_sort Safarishahrbijari, Anahita
collection PubMed
description BACKGROUND: Although dynamic models are increasingly used by decision makers as a source of insight to guide interventions in order to control communicable disease outbreaks, such models have long suffered from a risk of rapid obsolescence due to failure to keep updated with emerging epidemiological evidence. The application of statistical filtering algorithms to high-velocity data streams has recently demonstrated effectiveness in allowing such models to be automatically regrounded by each new set of incoming observations. The attractiveness of such techniques has been enhanced by the emergence of a new generation of geospatially specific, high-velocity data sources, including daily counts of relevant searches and social media posts. The information available in such electronic data sources complements that of traditional epidemiological data sources. OBJECTIVE: This study aims to evaluate the degree to which the predictive accuracy of pandemic projection models regrounded via machine learning in daily clinical data can be enhanced by extending such methods to leverage daily search counts. METHODS: We combined a previously published influenza A (H1N1) pandemic projection model with the sequential Monte Carlo technique of particle filtering, to reground the model bu using confirmed incident case counts and search volumes. The effectiveness of particle filtering was evaluated using a norm discrepancy metric via predictive and dataset-specific cross-validation. RESULTS: Our results suggested that despite the data quality limitations of daily search volume data, the predictive accuracy of dynamic models can be strongly elevated by inclusion of such data in filtering methods. CONCLUSIONS: The predictive accuracy of dynamic models can be notably enhanced by tapping a readily accessible, publicly available, high-velocity data source. This work highlights a low-cost, low-burden avenue for strengthening model-based outbreak intervention response planning using low-cost public electronic datasets.
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spelling pubmed-65924862019-07-17 Social Media Surveillance for Outbreak Projection via Transmission Models: Longitudinal Observational Study Safarishahrbijari, Anahita Osgood, Nathaniel D JMIR Public Health Surveill Original Paper BACKGROUND: Although dynamic models are increasingly used by decision makers as a source of insight to guide interventions in order to control communicable disease outbreaks, such models have long suffered from a risk of rapid obsolescence due to failure to keep updated with emerging epidemiological evidence. The application of statistical filtering algorithms to high-velocity data streams has recently demonstrated effectiveness in allowing such models to be automatically regrounded by each new set of incoming observations. The attractiveness of such techniques has been enhanced by the emergence of a new generation of geospatially specific, high-velocity data sources, including daily counts of relevant searches and social media posts. The information available in such electronic data sources complements that of traditional epidemiological data sources. OBJECTIVE: This study aims to evaluate the degree to which the predictive accuracy of pandemic projection models regrounded via machine learning in daily clinical data can be enhanced by extending such methods to leverage daily search counts. METHODS: We combined a previously published influenza A (H1N1) pandemic projection model with the sequential Monte Carlo technique of particle filtering, to reground the model bu using confirmed incident case counts and search volumes. The effectiveness of particle filtering was evaluated using a norm discrepancy metric via predictive and dataset-specific cross-validation. RESULTS: Our results suggested that despite the data quality limitations of daily search volume data, the predictive accuracy of dynamic models can be strongly elevated by inclusion of such data in filtering methods. CONCLUSIONS: The predictive accuracy of dynamic models can be notably enhanced by tapping a readily accessible, publicly available, high-velocity data source. This work highlights a low-cost, low-burden avenue for strengthening model-based outbreak intervention response planning using low-cost public electronic datasets. JMIR Publications 2019-05-26 /pmc/articles/PMC6592486/ /pubmed/31199339 http://dx.doi.org/10.2196/11615 Text en ©Anahita Safarishahrbijari, Nathaniel D Osgood. Originally published in JMIR Public Health and Surveillance (http://publichealth.jmir.org), 26.05.2019. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Public Health and Surveillance, is properly cited. The complete bibliographic information, a link to the original publication on http://publichealth.jmir.org, as well as this copyright and license information must be included.
spellingShingle Original Paper
Safarishahrbijari, Anahita
Osgood, Nathaniel D
Social Media Surveillance for Outbreak Projection via Transmission Models: Longitudinal Observational Study
title Social Media Surveillance for Outbreak Projection via Transmission Models: Longitudinal Observational Study
title_full Social Media Surveillance for Outbreak Projection via Transmission Models: Longitudinal Observational Study
title_fullStr Social Media Surveillance for Outbreak Projection via Transmission Models: Longitudinal Observational Study
title_full_unstemmed Social Media Surveillance for Outbreak Projection via Transmission Models: Longitudinal Observational Study
title_short Social Media Surveillance for Outbreak Projection via Transmission Models: Longitudinal Observational Study
title_sort social media surveillance for outbreak projection via transmission models: longitudinal observational study
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6592486/
https://www.ncbi.nlm.nih.gov/pubmed/31199339
http://dx.doi.org/10.2196/11615
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