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Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii
RB-GRP (RNA-binding Glycine-rich protein gene) family belongs to the fourth subfamily of the GRP (Glycine-rich protein gene) superfamily, which plays a great role in plant growth and development, as well as in abiotic stresses response, while it has not been identified in cotton. Here, we identified...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6594650/ https://www.ncbi.nlm.nih.gov/pubmed/31242257 http://dx.doi.org/10.1371/journal.pone.0218938 |
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author | Yang, Wencui Yu, Min Zou, Changsong Lu, Cairui Yu, Daoqian Cheng, Hailiang Jiang, Pengfei Feng, Xiaoxu Zhang, Youping Wang, Qiaolian Zhang, Hong Song, Guoli Zhou, Zhuqing |
author_facet | Yang, Wencui Yu, Min Zou, Changsong Lu, Cairui Yu, Daoqian Cheng, Hailiang Jiang, Pengfei Feng, Xiaoxu Zhang, Youping Wang, Qiaolian Zhang, Hong Song, Guoli Zhou, Zhuqing |
author_sort | Yang, Wencui |
collection | PubMed |
description | RB-GRP (RNA-binding Glycine-rich protein gene) family belongs to the fourth subfamily of the GRP (Glycine-rich protein gene) superfamily, which plays a great role in plant growth and development, as well as in abiotic stresses response, while it has not been identified in cotton. Here, we identified 37 and 32 RB-GRPs from two cotton species (Gossypium arboreum and Gossypium raimondii, respectively), which were divided into four distinct subfamilies based on the presence of additional motifs and the arrangement of the glycine repeats. The distribution of RB-GRPs was nonrandom and uneven among the chromosomes both in two cotton species. The expansion of RB-GRP gene family between two cultivars was mainly attributed to segmental and tandem duplication events indicated by synteny analysis, and the tandem duplicated genes were mapped into homologous collinear blocks, indicated that they shared a common ancestral gene in both species. Furthermore, most RB-GRPs in two cotton species undergone stronger negative selective pressure by evolutionary analysis of RB-GRP orthologous genes. Meanwhile, RB-GRPs participated in different abiotic stresses (Abscisic acid, salt and Polyethylene glycol) responses and tissues at different developmental stages between two cotton species were showed by gene expression analysis. This research would provide insight into the evolution and function of the RB-GRPs in Gossypium species. |
format | Online Article Text |
id | pubmed-6594650 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-65946502019-07-05 Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii Yang, Wencui Yu, Min Zou, Changsong Lu, Cairui Yu, Daoqian Cheng, Hailiang Jiang, Pengfei Feng, Xiaoxu Zhang, Youping Wang, Qiaolian Zhang, Hong Song, Guoli Zhou, Zhuqing PLoS One Research Article RB-GRP (RNA-binding Glycine-rich protein gene) family belongs to the fourth subfamily of the GRP (Glycine-rich protein gene) superfamily, which plays a great role in plant growth and development, as well as in abiotic stresses response, while it has not been identified in cotton. Here, we identified 37 and 32 RB-GRPs from two cotton species (Gossypium arboreum and Gossypium raimondii, respectively), which were divided into four distinct subfamilies based on the presence of additional motifs and the arrangement of the glycine repeats. The distribution of RB-GRPs was nonrandom and uneven among the chromosomes both in two cotton species. The expansion of RB-GRP gene family between two cultivars was mainly attributed to segmental and tandem duplication events indicated by synteny analysis, and the tandem duplicated genes were mapped into homologous collinear blocks, indicated that they shared a common ancestral gene in both species. Furthermore, most RB-GRPs in two cotton species undergone stronger negative selective pressure by evolutionary analysis of RB-GRP orthologous genes. Meanwhile, RB-GRPs participated in different abiotic stresses (Abscisic acid, salt and Polyethylene glycol) responses and tissues at different developmental stages between two cotton species were showed by gene expression analysis. This research would provide insight into the evolution and function of the RB-GRPs in Gossypium species. Public Library of Science 2019-06-26 /pmc/articles/PMC6594650/ /pubmed/31242257 http://dx.doi.org/10.1371/journal.pone.0218938 Text en © 2019 Yang et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Yang, Wencui Yu, Min Zou, Changsong Lu, Cairui Yu, Daoqian Cheng, Hailiang Jiang, Pengfei Feng, Xiaoxu Zhang, Youping Wang, Qiaolian Zhang, Hong Song, Guoli Zhou, Zhuqing Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii |
title | Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii |
title_full | Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii |
title_fullStr | Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii |
title_full_unstemmed | Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii |
title_short | Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii |
title_sort | genome-wide comparative analysis of rna-binding glycine-rich protein family genes between gossypium arboreum and gossypium raimondii |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6594650/ https://www.ncbi.nlm.nih.gov/pubmed/31242257 http://dx.doi.org/10.1371/journal.pone.0218938 |
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