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Easy calibration of the Light Plate Apparatus for optogenetic experiments

Optogenetic systems use genetically-encoded light-sensitive proteins to control and study cellular processes. As the number and quality of these systems grows, there is an increasing need for user-friendly and flexible hardware to provide programmed illumination to cultures of cells. One platform wh...

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Autores principales: Sweeney, Kieran, Moreno Morales, Neydis, Burmeister, Zachary, Nimunkar, Amit J., McClean, Megan N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6594922/
https://www.ncbi.nlm.nih.gov/pubmed/31293905
http://dx.doi.org/10.1016/j.mex.2019.06.008
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author Sweeney, Kieran
Moreno Morales, Neydis
Burmeister, Zachary
Nimunkar, Amit J.
McClean, Megan N.
author_facet Sweeney, Kieran
Moreno Morales, Neydis
Burmeister, Zachary
Nimunkar, Amit J.
McClean, Megan N.
author_sort Sweeney, Kieran
collection PubMed
description Optogenetic systems use genetically-encoded light-sensitive proteins to control and study cellular processes. As the number and quality of these systems grows, there is an increasing need for user-friendly and flexible hardware to provide programmed illumination to cultures of cells. One platform which satisfies this need for a variety of optogenetic systems and organisms is the Light Plate Apparatus (LPA), which delivers a controlled light dose to each well of a 24-well plate. Experimental reproducibility requires appropriate calibration to produce accurate light doses within individual wells of the LPA and between LPAs. In this study, we present an easy and accurate method for calibrating the LPA. In particular, we: • developed a 3D printed adaptor and MATLAB code to allow rapid measurement of irradiance produced by the LPA and subsequent calibration; • provide appropriate code and methodology for generating a standard curve for each LPA; • demonstrate the utility and accuracy of this method between users and LPAs.
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spelling pubmed-65949222019-07-10 Easy calibration of the Light Plate Apparatus for optogenetic experiments Sweeney, Kieran Moreno Morales, Neydis Burmeister, Zachary Nimunkar, Amit J. McClean, Megan N. MethodsX Biochemistry, Genetics and Molecular Biology Optogenetic systems use genetically-encoded light-sensitive proteins to control and study cellular processes. As the number and quality of these systems grows, there is an increasing need for user-friendly and flexible hardware to provide programmed illumination to cultures of cells. One platform which satisfies this need for a variety of optogenetic systems and organisms is the Light Plate Apparatus (LPA), which delivers a controlled light dose to each well of a 24-well plate. Experimental reproducibility requires appropriate calibration to produce accurate light doses within individual wells of the LPA and between LPAs. In this study, we present an easy and accurate method for calibrating the LPA. In particular, we: • developed a 3D printed adaptor and MATLAB code to allow rapid measurement of irradiance produced by the LPA and subsequent calibration; • provide appropriate code and methodology for generating a standard curve for each LPA; • demonstrate the utility and accuracy of this method between users and LPAs. Elsevier 2019-06-13 /pmc/articles/PMC6594922/ /pubmed/31293905 http://dx.doi.org/10.1016/j.mex.2019.06.008 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Sweeney, Kieran
Moreno Morales, Neydis
Burmeister, Zachary
Nimunkar, Amit J.
McClean, Megan N.
Easy calibration of the Light Plate Apparatus for optogenetic experiments
title Easy calibration of the Light Plate Apparatus for optogenetic experiments
title_full Easy calibration of the Light Plate Apparatus for optogenetic experiments
title_fullStr Easy calibration of the Light Plate Apparatus for optogenetic experiments
title_full_unstemmed Easy calibration of the Light Plate Apparatus for optogenetic experiments
title_short Easy calibration of the Light Plate Apparatus for optogenetic experiments
title_sort easy calibration of the light plate apparatus for optogenetic experiments
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6594922/
https://www.ncbi.nlm.nih.gov/pubmed/31293905
http://dx.doi.org/10.1016/j.mex.2019.06.008
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