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Genome/transcriptome collection of plethora of economically important, previously unexplored organisms from India and abroad

Genome and transcriptome sequencing data are extremely useful resources for researchers in carrying out biological experiments that involves cloning and characterizing genes. We are presenting here genome sequence data from different clades of life including photosynthetic prokaryotes; oomycetes pat...

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Autores principales: Panda, Arijit, Chaudhari, Narendrakumar M., Mukherjee, Mayuri, Ghosh, Samrat, Sarangi, Aditya Narayan, Mathu Malar, C., Kant, Shashi, Sen, Diya, Das, Abhishek, Das, Subhadeep, Singh, Deeksha, Prusty, Asharani, Tripathy, Sucheta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6595405/
https://www.ncbi.nlm.nih.gov/pubmed/31294057
http://dx.doi.org/10.1016/j.dib.2019.104099
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author Panda, Arijit
Chaudhari, Narendrakumar M.
Mukherjee, Mayuri
Ghosh, Samrat
Sarangi, Aditya Narayan
Mathu Malar, C.
Kant, Shashi
Sen, Diya
Das, Abhishek
Das, Subhadeep
Singh, Deeksha
Prusty, Asharani
Tripathy, Sucheta
author_facet Panda, Arijit
Chaudhari, Narendrakumar M.
Mukherjee, Mayuri
Ghosh, Samrat
Sarangi, Aditya Narayan
Mathu Malar, C.
Kant, Shashi
Sen, Diya
Das, Abhishek
Das, Subhadeep
Singh, Deeksha
Prusty, Asharani
Tripathy, Sucheta
author_sort Panda, Arijit
collection PubMed
description Genome and transcriptome sequencing data are extremely useful resources for researchers in carrying out biological experiments that involves cloning and characterizing genes. We are presenting here genome sequence data from different clades of life including photosynthetic prokaryotes; oomycetes pathogens; probiotic bacteria; endophytic yeasts and filamentous fungus and pathogenic protozoa Leishmania donovani. In addition, we are also presenting paired control and treated stress response transcriptomes of Cyanobacteria growing in extreme conditions. The Cyanobacterial species that are included in this dataset were isolated from extreme conditions including desiccated monuments, hot springs and saline archipelagos. The probiotic Lactobacillus paracasei was isolated from Indian sub-continent. The Kala azar causing protozoan Leishmania donovani, whose early infectious stage is also included in this dataset. The endophyte Arthrinium malaysianum was isolated as a contaminant has significant bio-remediation property. Our collaborators have isolated endophyte Rhodotorula mucilaginosa JGTA1 from Jaduguda mines, West Bengal, India infested with Uranium. Our collaborators have isolated a heterozygous diploid oomycetes pathogen, Phytophthora ramorum causing sudden oak death in CA, USA coast is also part of the data. These dataset presents a unique heterogeneous collection from various sources that are analyzed using “Genome Annotator Light (GAL): A Docker-based package for genome analysis and visualization” (Panda et al., 2019) and are presented in a web site automatically created by GAL at http://www.eumicrobedb.org/cglab.
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spelling pubmed-65954052019-07-10 Genome/transcriptome collection of plethora of economically important, previously unexplored organisms from India and abroad Panda, Arijit Chaudhari, Narendrakumar M. Mukherjee, Mayuri Ghosh, Samrat Sarangi, Aditya Narayan Mathu Malar, C. Kant, Shashi Sen, Diya Das, Abhishek Das, Subhadeep Singh, Deeksha Prusty, Asharani Tripathy, Sucheta Data Brief Biochemistry, Genetics and Molecular Biology Genome and transcriptome sequencing data are extremely useful resources for researchers in carrying out biological experiments that involves cloning and characterizing genes. We are presenting here genome sequence data from different clades of life including photosynthetic prokaryotes; oomycetes pathogens; probiotic bacteria; endophytic yeasts and filamentous fungus and pathogenic protozoa Leishmania donovani. In addition, we are also presenting paired control and treated stress response transcriptomes of Cyanobacteria growing in extreme conditions. The Cyanobacterial species that are included in this dataset were isolated from extreme conditions including desiccated monuments, hot springs and saline archipelagos. The probiotic Lactobacillus paracasei was isolated from Indian sub-continent. The Kala azar causing protozoan Leishmania donovani, whose early infectious stage is also included in this dataset. The endophyte Arthrinium malaysianum was isolated as a contaminant has significant bio-remediation property. Our collaborators have isolated endophyte Rhodotorula mucilaginosa JGTA1 from Jaduguda mines, West Bengal, India infested with Uranium. Our collaborators have isolated a heterozygous diploid oomycetes pathogen, Phytophthora ramorum causing sudden oak death in CA, USA coast is also part of the data. These dataset presents a unique heterogeneous collection from various sources that are analyzed using “Genome Annotator Light (GAL): A Docker-based package for genome analysis and visualization” (Panda et al., 2019) and are presented in a web site automatically created by GAL at http://www.eumicrobedb.org/cglab. Elsevier 2019-06-05 /pmc/articles/PMC6595405/ /pubmed/31294057 http://dx.doi.org/10.1016/j.dib.2019.104099 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Panda, Arijit
Chaudhari, Narendrakumar M.
Mukherjee, Mayuri
Ghosh, Samrat
Sarangi, Aditya Narayan
Mathu Malar, C.
Kant, Shashi
Sen, Diya
Das, Abhishek
Das, Subhadeep
Singh, Deeksha
Prusty, Asharani
Tripathy, Sucheta
Genome/transcriptome collection of plethora of economically important, previously unexplored organisms from India and abroad
title Genome/transcriptome collection of plethora of economically important, previously unexplored organisms from India and abroad
title_full Genome/transcriptome collection of plethora of economically important, previously unexplored organisms from India and abroad
title_fullStr Genome/transcriptome collection of plethora of economically important, previously unexplored organisms from India and abroad
title_full_unstemmed Genome/transcriptome collection of plethora of economically important, previously unexplored organisms from India and abroad
title_short Genome/transcriptome collection of plethora of economically important, previously unexplored organisms from India and abroad
title_sort genome/transcriptome collection of plethora of economically important, previously unexplored organisms from india and abroad
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6595405/
https://www.ncbi.nlm.nih.gov/pubmed/31294057
http://dx.doi.org/10.1016/j.dib.2019.104099
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