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BlendMol: advanced macromolecular visualization in Blender

SUMMARY: Programs such as VMD and PyMOL are excellent tools for analyzing macromolecular structures, but they do not implement many of the advanced rendering techniques common in the film and video-game industries. In contrast, the open-source program Blender is a general-purpose tool for industry-s...

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Detalles Bibliográficos
Autor principal: Durrant, Jacob D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6596883/
https://www.ncbi.nlm.nih.gov/pubmed/30481283
http://dx.doi.org/10.1093/bioinformatics/bty968
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author Durrant, Jacob D
author_facet Durrant, Jacob D
author_sort Durrant, Jacob D
collection PubMed
description SUMMARY: Programs such as VMD and PyMOL are excellent tools for analyzing macromolecular structures, but they do not implement many of the advanced rendering techniques common in the film and video-game industries. In contrast, the open-source program Blender is a general-purpose tool for industry-standard rendering/visualization, but its user interface is poorly suited for rigorous scientific analysis. We present BlendMol, a Blender plugin that imports VMD or PyMOL scenes into Blender. BlendMol-generated images are well suited for use in manuscripts, outreach programs, websites and classes. AVAILABILITY AND IMPLEMENTATION: BlendMol is available free of charge from http://durrantlab.com/blendmol/. It is written in Python. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-65968832019-07-03 BlendMol: advanced macromolecular visualization in Blender Durrant, Jacob D Bioinformatics Applications Notes SUMMARY: Programs such as VMD and PyMOL are excellent tools for analyzing macromolecular structures, but they do not implement many of the advanced rendering techniques common in the film and video-game industries. In contrast, the open-source program Blender is a general-purpose tool for industry-standard rendering/visualization, but its user interface is poorly suited for rigorous scientific analysis. We present BlendMol, a Blender plugin that imports VMD or PyMOL scenes into Blender. BlendMol-generated images are well suited for use in manuscripts, outreach programs, websites and classes. AVAILABILITY AND IMPLEMENTATION: BlendMol is available free of charge from http://durrantlab.com/blendmol/. It is written in Python. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2019-07-01 2018-11-27 /pmc/articles/PMC6596883/ /pubmed/30481283 http://dx.doi.org/10.1093/bioinformatics/bty968 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Durrant, Jacob D
BlendMol: advanced macromolecular visualization in Blender
title BlendMol: advanced macromolecular visualization in Blender
title_full BlendMol: advanced macromolecular visualization in Blender
title_fullStr BlendMol: advanced macromolecular visualization in Blender
title_full_unstemmed BlendMol: advanced macromolecular visualization in Blender
title_short BlendMol: advanced macromolecular visualization in Blender
title_sort blendmol: advanced macromolecular visualization in blender
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6596883/
https://www.ncbi.nlm.nih.gov/pubmed/30481283
http://dx.doi.org/10.1093/bioinformatics/bty968
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