G4HunterApps

MOTIVATION: In order to help G4Hunter users and make it more accessible, I have developed a set of small applications within the Shiny/R framework. RESULTS: Each application fulfils simple tasks ranging from computing the G4Hunter score for a sequence or a list of sequence to extracting sequences wi...

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Detalles Bibliográficos
Autor principal: Lacroix, Laurent
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6596896/
https://www.ncbi.nlm.nih.gov/pubmed/30445487
http://dx.doi.org/10.1093/bioinformatics/bty951
Descripción
Sumario:MOTIVATION: In order to help G4Hunter users and make it more accessible, I have developed a set of small applications within the Shiny/R framework. RESULTS: Each application fulfils simple tasks ranging from computing the G4Hunter score for a sequence or a list of sequence to extracting sequences with a G4Hunter score above a threshold for a sequence up to 5 Mb or a list of short sequences. The application can be installed either on the user computer within Rstudio or on a Rstudio server. AVAILABILITY AND IMPLEMENTATION: The source code for the ShinyApps is available on GitHub (https://github.com/LacroixLaurent).

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