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G4HunterApps
MOTIVATION: In order to help G4Hunter users and make it more accessible, I have developed a set of small applications within the Shiny/R framework. RESULTS: Each application fulfils simple tasks ranging from computing the G4Hunter score for a sequence or a list of sequence to extracting sequences wi...
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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Oxford University Press
2019
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6596896/ https://www.ncbi.nlm.nih.gov/pubmed/30445487 http://dx.doi.org/10.1093/bioinformatics/bty951 |
| _version_ | 1783430515038093312 |
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| author | Lacroix, Laurent |
| author_facet | Lacroix, Laurent |
| author_sort | Lacroix, Laurent |
| collection | PubMed |
| description | MOTIVATION: In order to help G4Hunter users and make it more accessible, I have developed a set of small applications within the Shiny/R framework. RESULTS: Each application fulfils simple tasks ranging from computing the G4Hunter score for a sequence or a list of sequence to extracting sequences with a G4Hunter score above a threshold for a sequence up to 5 Mb or a list of short sequences. The application can be installed either on the user computer within Rstudio or on a Rstudio server. AVAILABILITY AND IMPLEMENTATION: The source code for the ShinyApps is available on GitHub (https://github.com/LacroixLaurent). |
| format | Online Article Text |
| id | pubmed-6596896 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2019 |
| publisher | Oxford University Press |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-65968962019-07-03 G4HunterApps Lacroix, Laurent Bioinformatics Applications Notes MOTIVATION: In order to help G4Hunter users and make it more accessible, I have developed a set of small applications within the Shiny/R framework. RESULTS: Each application fulfils simple tasks ranging from computing the G4Hunter score for a sequence or a list of sequence to extracting sequences with a G4Hunter score above a threshold for a sequence up to 5 Mb or a list of short sequences. The application can be installed either on the user computer within Rstudio or on a Rstudio server. AVAILABILITY AND IMPLEMENTATION: The source code for the ShinyApps is available on GitHub (https://github.com/LacroixLaurent). Oxford University Press 2019-07-01 2018-11-16 /pmc/articles/PMC6596896/ /pubmed/30445487 http://dx.doi.org/10.1093/bioinformatics/bty951 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
| spellingShingle | Applications Notes Lacroix, Laurent G4HunterApps |
| title | G4HunterApps |
| title_full | G4HunterApps |
| title_fullStr | G4HunterApps |
| title_full_unstemmed | G4HunterApps |
| title_short | G4HunterApps |
| title_sort | g4hunterapps |
| topic | Applications Notes |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6596896/ https://www.ncbi.nlm.nih.gov/pubmed/30445487 http://dx.doi.org/10.1093/bioinformatics/bty951 |
| work_keys_str_mv | AT lacroixlaurent g4hunterapps |