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Trader as a new optimization algorithm predicts drug-target interactions efficiently

Several machine learning approaches have been proposed for predicting new benefits of the existing drugs. Although these methods have introduced new usage(s) of some medications, efficient methods can lead to more accurate predictions. To this end, we proposed a novel machine learning method which i...

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Autores principales: Masoudi-Sobhanzadeh, Yosef, Omidi, Yadollah, Amanlou, Massoud, Masoudi-Nejad, Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6597553/
https://www.ncbi.nlm.nih.gov/pubmed/31249365
http://dx.doi.org/10.1038/s41598-019-45814-8
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author Masoudi-Sobhanzadeh, Yosef
Omidi, Yadollah
Amanlou, Massoud
Masoudi-Nejad, Ali
author_facet Masoudi-Sobhanzadeh, Yosef
Omidi, Yadollah
Amanlou, Massoud
Masoudi-Nejad, Ali
author_sort Masoudi-Sobhanzadeh, Yosef
collection PubMed
description Several machine learning approaches have been proposed for predicting new benefits of the existing drugs. Although these methods have introduced new usage(s) of some medications, efficient methods can lead to more accurate predictions. To this end, we proposed a novel machine learning method which is based on a new optimization algorithm, named Trader. To show the capabilities of the proposed algorithm which can be applied to the different scope of science, it was compared with ten other state-of-the-art optimization algorithms based on the standard and advanced benchmark functions. Next, a multi-layer artificial neural network was designed and trained by Trader to predict drug-target interactions (DTIs). Finally, the functionality of the proposed method was investigated on some DTIs datasets and compared with other methods. The data obtained by Trader showed that it eliminates the disadvantages of different optimization algorithms, resulting in a better outcome. Further, the proposed machine learning method was found to achieve a significant level of performance compared to the other popular and efficient approaches in predicting unknown DTIs. All the implemented source codes are freely available at https://github.com/LBBSoft/Trader.
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spelling pubmed-65975532019-07-09 Trader as a new optimization algorithm predicts drug-target interactions efficiently Masoudi-Sobhanzadeh, Yosef Omidi, Yadollah Amanlou, Massoud Masoudi-Nejad, Ali Sci Rep Article Several machine learning approaches have been proposed for predicting new benefits of the existing drugs. Although these methods have introduced new usage(s) of some medications, efficient methods can lead to more accurate predictions. To this end, we proposed a novel machine learning method which is based on a new optimization algorithm, named Trader. To show the capabilities of the proposed algorithm which can be applied to the different scope of science, it was compared with ten other state-of-the-art optimization algorithms based on the standard and advanced benchmark functions. Next, a multi-layer artificial neural network was designed and trained by Trader to predict drug-target interactions (DTIs). Finally, the functionality of the proposed method was investigated on some DTIs datasets and compared with other methods. The data obtained by Trader showed that it eliminates the disadvantages of different optimization algorithms, resulting in a better outcome. Further, the proposed machine learning method was found to achieve a significant level of performance compared to the other popular and efficient approaches in predicting unknown DTIs. All the implemented source codes are freely available at https://github.com/LBBSoft/Trader. Nature Publishing Group UK 2019-06-27 /pmc/articles/PMC6597553/ /pubmed/31249365 http://dx.doi.org/10.1038/s41598-019-45814-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Masoudi-Sobhanzadeh, Yosef
Omidi, Yadollah
Amanlou, Massoud
Masoudi-Nejad, Ali
Trader as a new optimization algorithm predicts drug-target interactions efficiently
title Trader as a new optimization algorithm predicts drug-target interactions efficiently
title_full Trader as a new optimization algorithm predicts drug-target interactions efficiently
title_fullStr Trader as a new optimization algorithm predicts drug-target interactions efficiently
title_full_unstemmed Trader as a new optimization algorithm predicts drug-target interactions efficiently
title_short Trader as a new optimization algorithm predicts drug-target interactions efficiently
title_sort trader as a new optimization algorithm predicts drug-target interactions efficiently
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6597553/
https://www.ncbi.nlm.nih.gov/pubmed/31249365
http://dx.doi.org/10.1038/s41598-019-45814-8
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