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Improved forecasts of influenza-associated hospitalization rates with Google Search Trends
Reliable forecasts of influenza-associated hospitalizations during seasonal outbreaks can help health systems better prepare for patient surges. Within the USA, public health surveillance systems collect and distribute near real-time weekly hospitalization rates, a key observational metric that make...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6597779/ https://www.ncbi.nlm.nih.gov/pubmed/31185818 http://dx.doi.org/10.1098/rsif.2019.0080 |
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author | Kandula, Sasikiran Pei, Sen Shaman, Jeffrey |
author_facet | Kandula, Sasikiran Pei, Sen Shaman, Jeffrey |
author_sort | Kandula, Sasikiran |
collection | PubMed |
description | Reliable forecasts of influenza-associated hospitalizations during seasonal outbreaks can help health systems better prepare for patient surges. Within the USA, public health surveillance systems collect and distribute near real-time weekly hospitalization rates, a key observational metric that makes real-time forecast of this outcome possible. In this paper, we describe a method to forecast hospitalization rates using a population level transmission model in combination with a data assimilation technique. Using this method, we generated retrospective forecasts of hospitalization rates for five age groups and the overall population during five seasons in the USA and quantified forecast accuracy for both near-term and seasonal targets. Additionally, we describe methods to correct for under-reporting of hospitalization rates (backcast) and to estimate hospitalization rates from publicly available online search trends data (nowcast). Forecasts based on surveillance rates alone were reasonably accurate in predicting peak hospitalization rates (within ± 25% of the actual peak rate, three weeks before peak). The error in predicting rates one to four weeks ahead, remained constant for the duration of the seasons, even during periods of increased influenza incidence. An improvement in forecast quality across all age groups, seasons and targets was observed when backcasts and nowcasts supplemented surveillance data. These results suggest that the model-inference framework can provide reasonably accurate real-time forecasts of influenza hospitalizations; backcasts and nowcasts offer a way to improve system tolerance to observational errors. |
format | Online Article Text |
id | pubmed-6597779 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-65977792019-07-01 Improved forecasts of influenza-associated hospitalization rates with Google Search Trends Kandula, Sasikiran Pei, Sen Shaman, Jeffrey J R Soc Interface Life Sciences–Mathematics interface Reliable forecasts of influenza-associated hospitalizations during seasonal outbreaks can help health systems better prepare for patient surges. Within the USA, public health surveillance systems collect and distribute near real-time weekly hospitalization rates, a key observational metric that makes real-time forecast of this outcome possible. In this paper, we describe a method to forecast hospitalization rates using a population level transmission model in combination with a data assimilation technique. Using this method, we generated retrospective forecasts of hospitalization rates for five age groups and the overall population during five seasons in the USA and quantified forecast accuracy for both near-term and seasonal targets. Additionally, we describe methods to correct for under-reporting of hospitalization rates (backcast) and to estimate hospitalization rates from publicly available online search trends data (nowcast). Forecasts based on surveillance rates alone were reasonably accurate in predicting peak hospitalization rates (within ± 25% of the actual peak rate, three weeks before peak). The error in predicting rates one to four weeks ahead, remained constant for the duration of the seasons, even during periods of increased influenza incidence. An improvement in forecast quality across all age groups, seasons and targets was observed when backcasts and nowcasts supplemented surveillance data. These results suggest that the model-inference framework can provide reasonably accurate real-time forecasts of influenza hospitalizations; backcasts and nowcasts offer a way to improve system tolerance to observational errors. The Royal Society 2019-06 2019-06-12 /pmc/articles/PMC6597779/ /pubmed/31185818 http://dx.doi.org/10.1098/rsif.2019.0080 Text en © 2019 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Life Sciences–Mathematics interface Kandula, Sasikiran Pei, Sen Shaman, Jeffrey Improved forecasts of influenza-associated hospitalization rates with Google Search Trends |
title | Improved forecasts of influenza-associated hospitalization rates with Google Search Trends |
title_full | Improved forecasts of influenza-associated hospitalization rates with Google Search Trends |
title_fullStr | Improved forecasts of influenza-associated hospitalization rates with Google Search Trends |
title_full_unstemmed | Improved forecasts of influenza-associated hospitalization rates with Google Search Trends |
title_short | Improved forecasts of influenza-associated hospitalization rates with Google Search Trends |
title_sort | improved forecasts of influenza-associated hospitalization rates with google search trends |
topic | Life Sciences–Mathematics interface |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6597779/ https://www.ncbi.nlm.nih.gov/pubmed/31185818 http://dx.doi.org/10.1098/rsif.2019.0080 |
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