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The genome of the Black Bengal goat (Capra hircus)

OBJECTIVES: Black Bengal goat (Capra hircus), a member of the Bovidae family with the unique traits of high prolificacy, skin quality and low demand for food is the most socioeconomically significant goat breed in Bangladesh. Furthermore, the aptitude of adaptation and disease resistance capacity of...

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Autores principales: Siddiki, Amam Zonaed, Baten, Abdul, Billah, Masum, Alam, Mohammad Atique Ul, Shawrob, Kazi Shefaul Mulk, Saha, Sourav, Chowdhury, Muntaha, Rahman, Atif Hasan, Stear, Michael, Miah, Gous, Kumkum, Mahadia, Islam, Mohammad Sirazul, Hossain, Mohammad Alamgir, Mollah, A. K. M. Moniruzzaman, Khan, Md. Kabirul Islam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6598337/
https://www.ncbi.nlm.nih.gov/pubmed/31248431
http://dx.doi.org/10.1186/s13104-019-4400-3
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author Siddiki, Amam Zonaed
Baten, Abdul
Billah, Masum
Alam, Mohammad Atique Ul
Shawrob, Kazi Shefaul Mulk
Saha, Sourav
Chowdhury, Muntaha
Rahman, Atif Hasan
Stear, Michael
Miah, Gous
Kumkum, Mahadia
Islam, Mohammad Sirazul
Hossain, Mohammad Alamgir
Mollah, A. K. M. Moniruzzaman
Khan, Md. Kabirul Islam
author_facet Siddiki, Amam Zonaed
Baten, Abdul
Billah, Masum
Alam, Mohammad Atique Ul
Shawrob, Kazi Shefaul Mulk
Saha, Sourav
Chowdhury, Muntaha
Rahman, Atif Hasan
Stear, Michael
Miah, Gous
Kumkum, Mahadia
Islam, Mohammad Sirazul
Hossain, Mohammad Alamgir
Mollah, A. K. M. Moniruzzaman
Khan, Md. Kabirul Islam
author_sort Siddiki, Amam Zonaed
collection PubMed
description OBJECTIVES: Black Bengal goat (Capra hircus), a member of the Bovidae family with the unique traits of high prolificacy, skin quality and low demand for food is the most socioeconomically significant goat breed in Bangladesh. Furthermore, the aptitude of adaptation and disease resistance capacity of it is highly notable which makes its whole genome information an area of research interest. DATA DESCRIPTION: The genomic DNA of a local (Chattogram, Bangladesh) healthy male Black Bengal goat (Capra hircus) was extracted and then sequenced. Sequencing was completed using the Illumina HiSeq 2500 sequencing platform and the draft assembly was generated using the “ARS1” genome as the reference. MAKER gene annotation pipeline was utilized to annotate 26,458 gene models. Genome completeness was assessed using BUSCO (Benchmarking Universal Single-Copy Orthologs) which showed 82.5% completeness of the assembled genome.
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spelling pubmed-65983372019-07-11 The genome of the Black Bengal goat (Capra hircus) Siddiki, Amam Zonaed Baten, Abdul Billah, Masum Alam, Mohammad Atique Ul Shawrob, Kazi Shefaul Mulk Saha, Sourav Chowdhury, Muntaha Rahman, Atif Hasan Stear, Michael Miah, Gous Kumkum, Mahadia Islam, Mohammad Sirazul Hossain, Mohammad Alamgir Mollah, A. K. M. Moniruzzaman Khan, Md. Kabirul Islam BMC Res Notes Data Note OBJECTIVES: Black Bengal goat (Capra hircus), a member of the Bovidae family with the unique traits of high prolificacy, skin quality and low demand for food is the most socioeconomically significant goat breed in Bangladesh. Furthermore, the aptitude of adaptation and disease resistance capacity of it is highly notable which makes its whole genome information an area of research interest. DATA DESCRIPTION: The genomic DNA of a local (Chattogram, Bangladesh) healthy male Black Bengal goat (Capra hircus) was extracted and then sequenced. Sequencing was completed using the Illumina HiSeq 2500 sequencing platform and the draft assembly was generated using the “ARS1” genome as the reference. MAKER gene annotation pipeline was utilized to annotate 26,458 gene models. Genome completeness was assessed using BUSCO (Benchmarking Universal Single-Copy Orthologs) which showed 82.5% completeness of the assembled genome. BioMed Central 2019-06-27 /pmc/articles/PMC6598337/ /pubmed/31248431 http://dx.doi.org/10.1186/s13104-019-4400-3 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Data Note
Siddiki, Amam Zonaed
Baten, Abdul
Billah, Masum
Alam, Mohammad Atique Ul
Shawrob, Kazi Shefaul Mulk
Saha, Sourav
Chowdhury, Muntaha
Rahman, Atif Hasan
Stear, Michael
Miah, Gous
Kumkum, Mahadia
Islam, Mohammad Sirazul
Hossain, Mohammad Alamgir
Mollah, A. K. M. Moniruzzaman
Khan, Md. Kabirul Islam
The genome of the Black Bengal goat (Capra hircus)
title The genome of the Black Bengal goat (Capra hircus)
title_full The genome of the Black Bengal goat (Capra hircus)
title_fullStr The genome of the Black Bengal goat (Capra hircus)
title_full_unstemmed The genome of the Black Bengal goat (Capra hircus)
title_short The genome of the Black Bengal goat (Capra hircus)
title_sort genome of the black bengal goat (capra hircus)
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6598337/
https://www.ncbi.nlm.nih.gov/pubmed/31248431
http://dx.doi.org/10.1186/s13104-019-4400-3
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