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The genome of the Black Bengal goat (Capra hircus)
OBJECTIVES: Black Bengal goat (Capra hircus), a member of the Bovidae family with the unique traits of high prolificacy, skin quality and low demand for food is the most socioeconomically significant goat breed in Bangladesh. Furthermore, the aptitude of adaptation and disease resistance capacity of...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6598337/ https://www.ncbi.nlm.nih.gov/pubmed/31248431 http://dx.doi.org/10.1186/s13104-019-4400-3 |
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author | Siddiki, Amam Zonaed Baten, Abdul Billah, Masum Alam, Mohammad Atique Ul Shawrob, Kazi Shefaul Mulk Saha, Sourav Chowdhury, Muntaha Rahman, Atif Hasan Stear, Michael Miah, Gous Kumkum, Mahadia Islam, Mohammad Sirazul Hossain, Mohammad Alamgir Mollah, A. K. M. Moniruzzaman Khan, Md. Kabirul Islam |
author_facet | Siddiki, Amam Zonaed Baten, Abdul Billah, Masum Alam, Mohammad Atique Ul Shawrob, Kazi Shefaul Mulk Saha, Sourav Chowdhury, Muntaha Rahman, Atif Hasan Stear, Michael Miah, Gous Kumkum, Mahadia Islam, Mohammad Sirazul Hossain, Mohammad Alamgir Mollah, A. K. M. Moniruzzaman Khan, Md. Kabirul Islam |
author_sort | Siddiki, Amam Zonaed |
collection | PubMed |
description | OBJECTIVES: Black Bengal goat (Capra hircus), a member of the Bovidae family with the unique traits of high prolificacy, skin quality and low demand for food is the most socioeconomically significant goat breed in Bangladesh. Furthermore, the aptitude of adaptation and disease resistance capacity of it is highly notable which makes its whole genome information an area of research interest. DATA DESCRIPTION: The genomic DNA of a local (Chattogram, Bangladesh) healthy male Black Bengal goat (Capra hircus) was extracted and then sequenced. Sequencing was completed using the Illumina HiSeq 2500 sequencing platform and the draft assembly was generated using the “ARS1” genome as the reference. MAKER gene annotation pipeline was utilized to annotate 26,458 gene models. Genome completeness was assessed using BUSCO (Benchmarking Universal Single-Copy Orthologs) which showed 82.5% completeness of the assembled genome. |
format | Online Article Text |
id | pubmed-6598337 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-65983372019-07-11 The genome of the Black Bengal goat (Capra hircus) Siddiki, Amam Zonaed Baten, Abdul Billah, Masum Alam, Mohammad Atique Ul Shawrob, Kazi Shefaul Mulk Saha, Sourav Chowdhury, Muntaha Rahman, Atif Hasan Stear, Michael Miah, Gous Kumkum, Mahadia Islam, Mohammad Sirazul Hossain, Mohammad Alamgir Mollah, A. K. M. Moniruzzaman Khan, Md. Kabirul Islam BMC Res Notes Data Note OBJECTIVES: Black Bengal goat (Capra hircus), a member of the Bovidae family with the unique traits of high prolificacy, skin quality and low demand for food is the most socioeconomically significant goat breed in Bangladesh. Furthermore, the aptitude of adaptation and disease resistance capacity of it is highly notable which makes its whole genome information an area of research interest. DATA DESCRIPTION: The genomic DNA of a local (Chattogram, Bangladesh) healthy male Black Bengal goat (Capra hircus) was extracted and then sequenced. Sequencing was completed using the Illumina HiSeq 2500 sequencing platform and the draft assembly was generated using the “ARS1” genome as the reference. MAKER gene annotation pipeline was utilized to annotate 26,458 gene models. Genome completeness was assessed using BUSCO (Benchmarking Universal Single-Copy Orthologs) which showed 82.5% completeness of the assembled genome. BioMed Central 2019-06-27 /pmc/articles/PMC6598337/ /pubmed/31248431 http://dx.doi.org/10.1186/s13104-019-4400-3 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Data Note Siddiki, Amam Zonaed Baten, Abdul Billah, Masum Alam, Mohammad Atique Ul Shawrob, Kazi Shefaul Mulk Saha, Sourav Chowdhury, Muntaha Rahman, Atif Hasan Stear, Michael Miah, Gous Kumkum, Mahadia Islam, Mohammad Sirazul Hossain, Mohammad Alamgir Mollah, A. K. M. Moniruzzaman Khan, Md. Kabirul Islam The genome of the Black Bengal goat (Capra hircus) |
title | The genome of the Black Bengal goat (Capra hircus) |
title_full | The genome of the Black Bengal goat (Capra hircus) |
title_fullStr | The genome of the Black Bengal goat (Capra hircus) |
title_full_unstemmed | The genome of the Black Bengal goat (Capra hircus) |
title_short | The genome of the Black Bengal goat (Capra hircus) |
title_sort | genome of the black bengal goat (capra hircus) |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6598337/ https://www.ncbi.nlm.nih.gov/pubmed/31248431 http://dx.doi.org/10.1186/s13104-019-4400-3 |
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