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Automatic optic disc detection in colour fundus images by means of multispectral analysis and information content
The optic disc (OD) in retinal fundus images is widely used as a reference in computer-based systems for the measurement of the severity of retinal disease. A number of algorithms have been published in the past 5 years to locate and measure the OD in digital fundus images. Our proposed algorithm, a...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6599671/ https://www.ncbi.nlm.nih.gov/pubmed/31293825 http://dx.doi.org/10.7717/peerj.7119 |
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author | Martinez-Perez, M. Elena Witt, Nicholas Parker, Kim H. Hughes, Alun D. Thom, Simon A.M. |
author_facet | Martinez-Perez, M. Elena Witt, Nicholas Parker, Kim H. Hughes, Alun D. Thom, Simon A.M. |
author_sort | Martinez-Perez, M. Elena |
collection | PubMed |
description | The optic disc (OD) in retinal fundus images is widely used as a reference in computer-based systems for the measurement of the severity of retinal disease. A number of algorithms have been published in the past 5 years to locate and measure the OD in digital fundus images. Our proposed algorithm, automatically: (i) uses the three channels (RGB) of the digital colour image to locate the region of interest (ROI) where the OD lies, (ii) measures the Shannon information content per channel in the ROI, to decide which channel is most appropriate for searching for the OD centre using the circular Hough transform. A series of evaluations were undertaken to test our hypothesis that using the three channels gives a better performance than a single channel. Three different databases were used for evaluation purposes with a total of 2,371 colour images giving a misdetection error of 3% in the localisation of the centre of the OD. We find that the area determined by our algorithm which assumes that the OD is circular, is similar to that found by other algorithms that detected the shape of the OD. Five metrics were measured for comparison with other recent studies. Combining the two databases where expert delineation of the OD is available (1,240 images), the average results for our multispectral algorithm are: TPR = 0.879, FPR = 0.003, Accuracy = 0.994, Overlap = 80.6% and Dice index = 0.878. |
format | Online Article Text |
id | pubmed-6599671 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-65996712019-07-10 Automatic optic disc detection in colour fundus images by means of multispectral analysis and information content Martinez-Perez, M. Elena Witt, Nicholas Parker, Kim H. Hughes, Alun D. Thom, Simon A.M. PeerJ Bioengineering The optic disc (OD) in retinal fundus images is widely used as a reference in computer-based systems for the measurement of the severity of retinal disease. A number of algorithms have been published in the past 5 years to locate and measure the OD in digital fundus images. Our proposed algorithm, automatically: (i) uses the three channels (RGB) of the digital colour image to locate the region of interest (ROI) where the OD lies, (ii) measures the Shannon information content per channel in the ROI, to decide which channel is most appropriate for searching for the OD centre using the circular Hough transform. A series of evaluations were undertaken to test our hypothesis that using the three channels gives a better performance than a single channel. Three different databases were used for evaluation purposes with a total of 2,371 colour images giving a misdetection error of 3% in the localisation of the centre of the OD. We find that the area determined by our algorithm which assumes that the OD is circular, is similar to that found by other algorithms that detected the shape of the OD. Five metrics were measured for comparison with other recent studies. Combining the two databases where expert delineation of the OD is available (1,240 images), the average results for our multispectral algorithm are: TPR = 0.879, FPR = 0.003, Accuracy = 0.994, Overlap = 80.6% and Dice index = 0.878. PeerJ Inc. 2019-06-27 /pmc/articles/PMC6599671/ /pubmed/31293825 http://dx.doi.org/10.7717/peerj.7119 Text en © 2019 Martinez-Perez et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioengineering Martinez-Perez, M. Elena Witt, Nicholas Parker, Kim H. Hughes, Alun D. Thom, Simon A.M. Automatic optic disc detection in colour fundus images by means of multispectral analysis and information content |
title | Automatic optic disc detection in colour fundus images by means of multispectral analysis and information content |
title_full | Automatic optic disc detection in colour fundus images by means of multispectral analysis and information content |
title_fullStr | Automatic optic disc detection in colour fundus images by means of multispectral analysis and information content |
title_full_unstemmed | Automatic optic disc detection in colour fundus images by means of multispectral analysis and information content |
title_short | Automatic optic disc detection in colour fundus images by means of multispectral analysis and information content |
title_sort | automatic optic disc detection in colour fundus images by means of multispectral analysis and information content |
topic | Bioengineering |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6599671/ https://www.ncbi.nlm.nih.gov/pubmed/31293825 http://dx.doi.org/10.7717/peerj.7119 |
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