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Conformational profile, vibrational assignments, NLO properties and molecular docking of biologically active herbicide1,1-dimethyl-3-phenylurea

1,1-Dimethyl-3-phenylurea (known as fenuron) which is a phenyl urea-based widely used herbicide exhibits interesting structural and conformational properties and a notable biological activity. A detailed analysis on the vibrational, molecular and electronic characteristics of fenuron has been carrie...

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Autores principales: Haruna, K., Kumar, Veena S., Sheena Mary, Y., Popoola, S.A., Thomas, Renjith, Roxy, M.S., Al-Saadi, A.A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6600072/
https://www.ncbi.nlm.nih.gov/pubmed/31304416
http://dx.doi.org/10.1016/j.heliyon.2019.e01987
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author Haruna, K.
Kumar, Veena S.
Sheena Mary, Y.
Popoola, S.A.
Thomas, Renjith
Roxy, M.S.
Al-Saadi, A.A.
author_facet Haruna, K.
Kumar, Veena S.
Sheena Mary, Y.
Popoola, S.A.
Thomas, Renjith
Roxy, M.S.
Al-Saadi, A.A.
author_sort Haruna, K.
collection PubMed
description 1,1-Dimethyl-3-phenylurea (known as fenuron) which is a phenyl urea-based widely used herbicide exhibits interesting structural and conformational properties and a notable biological activity. A detailed analysis on the vibrational, molecular and electronic characteristics of fenuron has been carried out. Potential energy scans (PESs) performed at the B3LYP/6-311++G(d,p) level of theory predicted two possible minima corresponding to the optimized anti and synforms resulting from the internal rotation about the N-C bond. The presence of an auxochrome together with the interaction with DMSO solvent exhibited a blue shift corresponding to the C=O orbitals. Delocalization of HOMO and LUMO orbital facilitated the charge transfer effect in the molecule. The calculated HOMO-LUMO energies, chemical potential, energy gap and global hardness suggested a low softness value for the compound while its biological activity was described by the value of electrophilicity. Chlorine substitution in the phenyl ring influenced the orbital delocalization for ortho and para substitutions but that of meta remained unaffected. NLO properties were noticed to increase due to chlorine substitution in the parent molecule. The docking results suggested that the compound exhibits an inhibitory activity against mitochondrial ubiquinol-cytochrome-c reductase and can be developed as a potential anticancer agent.
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spelling pubmed-66000722019-07-12 Conformational profile, vibrational assignments, NLO properties and molecular docking of biologically active herbicide1,1-dimethyl-3-phenylurea Haruna, K. Kumar, Veena S. Sheena Mary, Y. Popoola, S.A. Thomas, Renjith Roxy, M.S. Al-Saadi, A.A. Heliyon Article 1,1-Dimethyl-3-phenylurea (known as fenuron) which is a phenyl urea-based widely used herbicide exhibits interesting structural and conformational properties and a notable biological activity. A detailed analysis on the vibrational, molecular and electronic characteristics of fenuron has been carried out. Potential energy scans (PESs) performed at the B3LYP/6-311++G(d,p) level of theory predicted two possible minima corresponding to the optimized anti and synforms resulting from the internal rotation about the N-C bond. The presence of an auxochrome together with the interaction with DMSO solvent exhibited a blue shift corresponding to the C=O orbitals. Delocalization of HOMO and LUMO orbital facilitated the charge transfer effect in the molecule. The calculated HOMO-LUMO energies, chemical potential, energy gap and global hardness suggested a low softness value for the compound while its biological activity was described by the value of electrophilicity. Chlorine substitution in the phenyl ring influenced the orbital delocalization for ortho and para substitutions but that of meta remained unaffected. NLO properties were noticed to increase due to chlorine substitution in the parent molecule. The docking results suggested that the compound exhibits an inhibitory activity against mitochondrial ubiquinol-cytochrome-c reductase and can be developed as a potential anticancer agent. Elsevier 2019-06-25 /pmc/articles/PMC6600072/ /pubmed/31304416 http://dx.doi.org/10.1016/j.heliyon.2019.e01987 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Haruna, K.
Kumar, Veena S.
Sheena Mary, Y.
Popoola, S.A.
Thomas, Renjith
Roxy, M.S.
Al-Saadi, A.A.
Conformational profile, vibrational assignments, NLO properties and molecular docking of biologically active herbicide1,1-dimethyl-3-phenylurea
title Conformational profile, vibrational assignments, NLO properties and molecular docking of biologically active herbicide1,1-dimethyl-3-phenylurea
title_full Conformational profile, vibrational assignments, NLO properties and molecular docking of biologically active herbicide1,1-dimethyl-3-phenylurea
title_fullStr Conformational profile, vibrational assignments, NLO properties and molecular docking of biologically active herbicide1,1-dimethyl-3-phenylurea
title_full_unstemmed Conformational profile, vibrational assignments, NLO properties and molecular docking of biologically active herbicide1,1-dimethyl-3-phenylurea
title_short Conformational profile, vibrational assignments, NLO properties and molecular docking of biologically active herbicide1,1-dimethyl-3-phenylurea
title_sort conformational profile, vibrational assignments, nlo properties and molecular docking of biologically active herbicide1,1-dimethyl-3-phenylurea
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6600072/
https://www.ncbi.nlm.nih.gov/pubmed/31304416
http://dx.doi.org/10.1016/j.heliyon.2019.e01987
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