Cargando…

Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia.

Identifying the mechanisms through which genetic risk causes dementia is an imperative for new therapeutic development. Here, we apply a multi-stage, systems biology approach to elucidate disease mechanisms in frontotemporal dementia (FTD). We identify two gene co-expression modules that are preserv...

Descripción completa

Detalles Bibliográficos
Autores principales: Swarup, Vivek, Hinz, Flora I., Rexach, Jessica E., Noguchi, Ken-ichi, Toyoshiba, Hiroyoshi, Oda, Akira, Hirai, Keisuke, Sarkar, Arjun, Seyfried, Nicholas T., Cheng, Chialin, Haggarty, Stephen J., Grossman, Murray, Van Deerlin, Vivianna M., Trojanowski, John Q., Lah, James J., Levey, Allan I., Kondou, Shinichi, Geschwind, Daniel H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602064/
https://www.ncbi.nlm.nih.gov/pubmed/30510257
http://dx.doi.org/10.1038/s41591-018-0223-3
_version_ 1783431337763405824
author Swarup, Vivek
Hinz, Flora I.
Rexach, Jessica E.
Noguchi, Ken-ichi
Toyoshiba, Hiroyoshi
Oda, Akira
Hirai, Keisuke
Sarkar, Arjun
Seyfried, Nicholas T.
Cheng, Chialin
Haggarty, Stephen J.
Grossman, Murray
Van Deerlin, Vivianna M.
Trojanowski, John Q.
Lah, James J.
Levey, Allan I.
Kondou, Shinichi
Geschwind, Daniel H.
author_facet Swarup, Vivek
Hinz, Flora I.
Rexach, Jessica E.
Noguchi, Ken-ichi
Toyoshiba, Hiroyoshi
Oda, Akira
Hirai, Keisuke
Sarkar, Arjun
Seyfried, Nicholas T.
Cheng, Chialin
Haggarty, Stephen J.
Grossman, Murray
Van Deerlin, Vivianna M.
Trojanowski, John Q.
Lah, James J.
Levey, Allan I.
Kondou, Shinichi
Geschwind, Daniel H.
author_sort Swarup, Vivek
collection PubMed
description Identifying the mechanisms through which genetic risk causes dementia is an imperative for new therapeutic development. Here, we apply a multi-stage, systems biology approach to elucidate disease mechanisms in frontotemporal dementia (FTD). We identify two gene co-expression modules that are preserved in mice harboring mutations in MAPT, GRN, and other dementia mutations on diverse genetic backgrounds. We bridge the species divide via integration with proteomic and transcriptomic data from human brain to identify evolutionarily conserved, disease-relevant networks. We find that overexpression of miR-203, a hub of a putative regulatory miRNA module, re-capitulates mRNA co-expression patterns associated with disease state and induces neuronal cell death, establishing this miRNA as a regulator of neurodegeneration. Using a database of drug-mediated gene expression changes, we identify small molecules that can normalize the disease-associated modules and validate this experimentally. Our results highlight the utility of an integrative, cross-species, network approach to drug discovery.
format Online
Article
Text
id pubmed-6602064
institution National Center for Biotechnology Information
language English
publishDate 2018
record_format MEDLINE/PubMed
spelling pubmed-66020642019-07-01 Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia. Swarup, Vivek Hinz, Flora I. Rexach, Jessica E. Noguchi, Ken-ichi Toyoshiba, Hiroyoshi Oda, Akira Hirai, Keisuke Sarkar, Arjun Seyfried, Nicholas T. Cheng, Chialin Haggarty, Stephen J. Grossman, Murray Van Deerlin, Vivianna M. Trojanowski, John Q. Lah, James J. Levey, Allan I. Kondou, Shinichi Geschwind, Daniel H. Nat Med Article Identifying the mechanisms through which genetic risk causes dementia is an imperative for new therapeutic development. Here, we apply a multi-stage, systems biology approach to elucidate disease mechanisms in frontotemporal dementia (FTD). We identify two gene co-expression modules that are preserved in mice harboring mutations in MAPT, GRN, and other dementia mutations on diverse genetic backgrounds. We bridge the species divide via integration with proteomic and transcriptomic data from human brain to identify evolutionarily conserved, disease-relevant networks. We find that overexpression of miR-203, a hub of a putative regulatory miRNA module, re-capitulates mRNA co-expression patterns associated with disease state and induces neuronal cell death, establishing this miRNA as a regulator of neurodegeneration. Using a database of drug-mediated gene expression changes, we identify small molecules that can normalize the disease-associated modules and validate this experimentally. Our results highlight the utility of an integrative, cross-species, network approach to drug discovery. 2018-12-03 2019-01 /pmc/articles/PMC6602064/ /pubmed/30510257 http://dx.doi.org/10.1038/s41591-018-0223-3 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Swarup, Vivek
Hinz, Flora I.
Rexach, Jessica E.
Noguchi, Ken-ichi
Toyoshiba, Hiroyoshi
Oda, Akira
Hirai, Keisuke
Sarkar, Arjun
Seyfried, Nicholas T.
Cheng, Chialin
Haggarty, Stephen J.
Grossman, Murray
Van Deerlin, Vivianna M.
Trojanowski, John Q.
Lah, James J.
Levey, Allan I.
Kondou, Shinichi
Geschwind, Daniel H.
Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia.
title Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia.
title_full Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia.
title_fullStr Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia.
title_full_unstemmed Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia.
title_short Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia.
title_sort identification of evolutionarily conserved gene networks mediating neurodegenerative dementia.
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602064/
https://www.ncbi.nlm.nih.gov/pubmed/30510257
http://dx.doi.org/10.1038/s41591-018-0223-3
work_keys_str_mv AT swarupvivek identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT hinzflorai identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT rexachjessicae identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT noguchikenichi identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT toyoshibahiroyoshi identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT odaakira identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT hiraikeisuke identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT sarkararjun identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT seyfriednicholast identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT chengchialin identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT haggartystephenj identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT grossmanmurray identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT vandeerlinviviannam identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT trojanowskijohnq identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT lahjamesj identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT leveyallani identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT kondoushinichi identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia
AT geschwinddanielh identificationofevolutionarilyconservedgenenetworksmediatingneurodegenerativedementia