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Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia.
Identifying the mechanisms through which genetic risk causes dementia is an imperative for new therapeutic development. Here, we apply a multi-stage, systems biology approach to elucidate disease mechanisms in frontotemporal dementia (FTD). We identify two gene co-expression modules that are preserv...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602064/ https://www.ncbi.nlm.nih.gov/pubmed/30510257 http://dx.doi.org/10.1038/s41591-018-0223-3 |
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author | Swarup, Vivek Hinz, Flora I. Rexach, Jessica E. Noguchi, Ken-ichi Toyoshiba, Hiroyoshi Oda, Akira Hirai, Keisuke Sarkar, Arjun Seyfried, Nicholas T. Cheng, Chialin Haggarty, Stephen J. Grossman, Murray Van Deerlin, Vivianna M. Trojanowski, John Q. Lah, James J. Levey, Allan I. Kondou, Shinichi Geschwind, Daniel H. |
author_facet | Swarup, Vivek Hinz, Flora I. Rexach, Jessica E. Noguchi, Ken-ichi Toyoshiba, Hiroyoshi Oda, Akira Hirai, Keisuke Sarkar, Arjun Seyfried, Nicholas T. Cheng, Chialin Haggarty, Stephen J. Grossman, Murray Van Deerlin, Vivianna M. Trojanowski, John Q. Lah, James J. Levey, Allan I. Kondou, Shinichi Geschwind, Daniel H. |
author_sort | Swarup, Vivek |
collection | PubMed |
description | Identifying the mechanisms through which genetic risk causes dementia is an imperative for new therapeutic development. Here, we apply a multi-stage, systems biology approach to elucidate disease mechanisms in frontotemporal dementia (FTD). We identify two gene co-expression modules that are preserved in mice harboring mutations in MAPT, GRN, and other dementia mutations on diverse genetic backgrounds. We bridge the species divide via integration with proteomic and transcriptomic data from human brain to identify evolutionarily conserved, disease-relevant networks. We find that overexpression of miR-203, a hub of a putative regulatory miRNA module, re-capitulates mRNA co-expression patterns associated with disease state and induces neuronal cell death, establishing this miRNA as a regulator of neurodegeneration. Using a database of drug-mediated gene expression changes, we identify small molecules that can normalize the disease-associated modules and validate this experimentally. Our results highlight the utility of an integrative, cross-species, network approach to drug discovery. |
format | Online Article Text |
id | pubmed-6602064 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
record_format | MEDLINE/PubMed |
spelling | pubmed-66020642019-07-01 Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia. Swarup, Vivek Hinz, Flora I. Rexach, Jessica E. Noguchi, Ken-ichi Toyoshiba, Hiroyoshi Oda, Akira Hirai, Keisuke Sarkar, Arjun Seyfried, Nicholas T. Cheng, Chialin Haggarty, Stephen J. Grossman, Murray Van Deerlin, Vivianna M. Trojanowski, John Q. Lah, James J. Levey, Allan I. Kondou, Shinichi Geschwind, Daniel H. Nat Med Article Identifying the mechanisms through which genetic risk causes dementia is an imperative for new therapeutic development. Here, we apply a multi-stage, systems biology approach to elucidate disease mechanisms in frontotemporal dementia (FTD). We identify two gene co-expression modules that are preserved in mice harboring mutations in MAPT, GRN, and other dementia mutations on diverse genetic backgrounds. We bridge the species divide via integration with proteomic and transcriptomic data from human brain to identify evolutionarily conserved, disease-relevant networks. We find that overexpression of miR-203, a hub of a putative regulatory miRNA module, re-capitulates mRNA co-expression patterns associated with disease state and induces neuronal cell death, establishing this miRNA as a regulator of neurodegeneration. Using a database of drug-mediated gene expression changes, we identify small molecules that can normalize the disease-associated modules and validate this experimentally. Our results highlight the utility of an integrative, cross-species, network approach to drug discovery. 2018-12-03 2019-01 /pmc/articles/PMC6602064/ /pubmed/30510257 http://dx.doi.org/10.1038/s41591-018-0223-3 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Swarup, Vivek Hinz, Flora I. Rexach, Jessica E. Noguchi, Ken-ichi Toyoshiba, Hiroyoshi Oda, Akira Hirai, Keisuke Sarkar, Arjun Seyfried, Nicholas T. Cheng, Chialin Haggarty, Stephen J. Grossman, Murray Van Deerlin, Vivianna M. Trojanowski, John Q. Lah, James J. Levey, Allan I. Kondou, Shinichi Geschwind, Daniel H. Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia. |
title | Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia. |
title_full | Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia. |
title_fullStr | Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia. |
title_full_unstemmed | Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia. |
title_short | Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia. |
title_sort | identification of evolutionarily conserved gene networks mediating neurodegenerative dementia. |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602064/ https://www.ncbi.nlm.nih.gov/pubmed/30510257 http://dx.doi.org/10.1038/s41591-018-0223-3 |
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