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WashU Epigenome Browser update 2019

The WashU Epigenome Browser (https://epigenomegateway.wustl.edu/) provides visualization, integration and analysis tools for epigenomic datasets. Since 2010, it has provided the scientific community with data from large consortia including the Roadmap Epigenomics and the ENCODE projects. Recently, w...

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Detalles Bibliográficos
Autores principales: Li, Daofeng, Hsu, Silas, Purushotham, Deepak, Sears, Renee L, Wang, Ting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602459/
https://www.ncbi.nlm.nih.gov/pubmed/31165883
http://dx.doi.org/10.1093/nar/gkz348
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author Li, Daofeng
Hsu, Silas
Purushotham, Deepak
Sears, Renee L
Wang, Ting
author_facet Li, Daofeng
Hsu, Silas
Purushotham, Deepak
Sears, Renee L
Wang, Ting
author_sort Li, Daofeng
collection PubMed
description The WashU Epigenome Browser (https://epigenomegateway.wustl.edu/) provides visualization, integration and analysis tools for epigenomic datasets. Since 2010, it has provided the scientific community with data from large consortia including the Roadmap Epigenomics and the ENCODE projects. Recently, we refactored the codebase, redesigned the user interface, and developed various novel features. New features include: (i) visualization using virtual reality (VR), which has implications in biology education and the study of 3D chromatin structure; (ii) expanded public data hubs, including data from the 4DN, ENCODE, Roadmap Epigenomics, TaRGET, IHEC and TCGA consortia; (iii) a more responsive user interface; (iv) a history of interactions, which enables undo and redo; (v) a feature we call Live Browsing, which allows multiple users to collaborate remotely on the same session; (vi) the ability to visualize local tracks and data hubs. Amazon Web Services also hosts the redesign at https://epigenomegateway.org/.
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spelling pubmed-66024592019-07-05 WashU Epigenome Browser update 2019 Li, Daofeng Hsu, Silas Purushotham, Deepak Sears, Renee L Wang, Ting Nucleic Acids Res Web Server Issue The WashU Epigenome Browser (https://epigenomegateway.wustl.edu/) provides visualization, integration and analysis tools for epigenomic datasets. Since 2010, it has provided the scientific community with data from large consortia including the Roadmap Epigenomics and the ENCODE projects. Recently, we refactored the codebase, redesigned the user interface, and developed various novel features. New features include: (i) visualization using virtual reality (VR), which has implications in biology education and the study of 3D chromatin structure; (ii) expanded public data hubs, including data from the 4DN, ENCODE, Roadmap Epigenomics, TaRGET, IHEC and TCGA consortia; (iii) a more responsive user interface; (iv) a history of interactions, which enables undo and redo; (v) a feature we call Live Browsing, which allows multiple users to collaborate remotely on the same session; (vi) the ability to visualize local tracks and data hubs. Amazon Web Services also hosts the redesign at https://epigenomegateway.org/. Oxford University Press 2019-07-02 2019-06-05 /pmc/articles/PMC6602459/ /pubmed/31165883 http://dx.doi.org/10.1093/nar/gkz348 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Web Server Issue
Li, Daofeng
Hsu, Silas
Purushotham, Deepak
Sears, Renee L
Wang, Ting
WashU Epigenome Browser update 2019
title WashU Epigenome Browser update 2019
title_full WashU Epigenome Browser update 2019
title_fullStr WashU Epigenome Browser update 2019
title_full_unstemmed WashU Epigenome Browser update 2019
title_short WashU Epigenome Browser update 2019
title_sort washu epigenome browser update 2019
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602459/
https://www.ncbi.nlm.nih.gov/pubmed/31165883
http://dx.doi.org/10.1093/nar/gkz348
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