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WashU Epigenome Browser update 2019
The WashU Epigenome Browser (https://epigenomegateway.wustl.edu/) provides visualization, integration and analysis tools for epigenomic datasets. Since 2010, it has provided the scientific community with data from large consortia including the Roadmap Epigenomics and the ENCODE projects. Recently, w...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602459/ https://www.ncbi.nlm.nih.gov/pubmed/31165883 http://dx.doi.org/10.1093/nar/gkz348 |
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author | Li, Daofeng Hsu, Silas Purushotham, Deepak Sears, Renee L Wang, Ting |
author_facet | Li, Daofeng Hsu, Silas Purushotham, Deepak Sears, Renee L Wang, Ting |
author_sort | Li, Daofeng |
collection | PubMed |
description | The WashU Epigenome Browser (https://epigenomegateway.wustl.edu/) provides visualization, integration and analysis tools for epigenomic datasets. Since 2010, it has provided the scientific community with data from large consortia including the Roadmap Epigenomics and the ENCODE projects. Recently, we refactored the codebase, redesigned the user interface, and developed various novel features. New features include: (i) visualization using virtual reality (VR), which has implications in biology education and the study of 3D chromatin structure; (ii) expanded public data hubs, including data from the 4DN, ENCODE, Roadmap Epigenomics, TaRGET, IHEC and TCGA consortia; (iii) a more responsive user interface; (iv) a history of interactions, which enables undo and redo; (v) a feature we call Live Browsing, which allows multiple users to collaborate remotely on the same session; (vi) the ability to visualize local tracks and data hubs. Amazon Web Services also hosts the redesign at https://epigenomegateway.org/. |
format | Online Article Text |
id | pubmed-6602459 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-66024592019-07-05 WashU Epigenome Browser update 2019 Li, Daofeng Hsu, Silas Purushotham, Deepak Sears, Renee L Wang, Ting Nucleic Acids Res Web Server Issue The WashU Epigenome Browser (https://epigenomegateway.wustl.edu/) provides visualization, integration and analysis tools for epigenomic datasets. Since 2010, it has provided the scientific community with data from large consortia including the Roadmap Epigenomics and the ENCODE projects. Recently, we refactored the codebase, redesigned the user interface, and developed various novel features. New features include: (i) visualization using virtual reality (VR), which has implications in biology education and the study of 3D chromatin structure; (ii) expanded public data hubs, including data from the 4DN, ENCODE, Roadmap Epigenomics, TaRGET, IHEC and TCGA consortia; (iii) a more responsive user interface; (iv) a history of interactions, which enables undo and redo; (v) a feature we call Live Browsing, which allows multiple users to collaborate remotely on the same session; (vi) the ability to visualize local tracks and data hubs. Amazon Web Services also hosts the redesign at https://epigenomegateway.org/. Oxford University Press 2019-07-02 2019-06-05 /pmc/articles/PMC6602459/ /pubmed/31165883 http://dx.doi.org/10.1093/nar/gkz348 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Web Server Issue Li, Daofeng Hsu, Silas Purushotham, Deepak Sears, Renee L Wang, Ting WashU Epigenome Browser update 2019 |
title | WashU Epigenome Browser update 2019 |
title_full | WashU Epigenome Browser update 2019 |
title_fullStr | WashU Epigenome Browser update 2019 |
title_full_unstemmed | WashU Epigenome Browser update 2019 |
title_short | WashU Epigenome Browser update 2019 |
title_sort | washu epigenome browser update 2019 |
topic | Web Server Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602459/ https://www.ncbi.nlm.nih.gov/pubmed/31165883 http://dx.doi.org/10.1093/nar/gkz348 |
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