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Interactive Tree Of Life (iTOL) v4: recent updates and new developments

The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone. The current version introduces four new dataset types, together with numerous new features. Annotation opti...

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Detalles Bibliográficos
Autores principales: Letunic, Ivica, Bork, Peer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602468/
https://www.ncbi.nlm.nih.gov/pubmed/30931475
http://dx.doi.org/10.1093/nar/gkz239
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author Letunic, Ivica
Bork, Peer
author_facet Letunic, Ivica
Bork, Peer
author_sort Letunic, Ivica
collection PubMed
description The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone. The current version introduces four new dataset types, together with numerous new features. Annotation options have been expanded and new control options added for many display elements. An interactive spreadsheet-like editor has been implemented, providing dataset creation and editing directly in the web interface. Font support has been rewritten with full support for UTF-8 character encoding throughout the user interface. Google Web Fonts are now fully supported in the tree text labels. iTOL v4 is the first tool which supports direct visualization of Qiime 2 trees and associated annotations. The user account system has been streamlined and expanded with new navigation options, and currently handles >700 000 trees from more than 40 000 individual users. Full batch access has been implemented allowing programmatic upload and export of trees and annotations.
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spelling pubmed-66024682019-07-05 Interactive Tree Of Life (iTOL) v4: recent updates and new developments Letunic, Ivica Bork, Peer Nucleic Acids Res Web Server Issue The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone. The current version introduces four new dataset types, together with numerous new features. Annotation options have been expanded and new control options added for many display elements. An interactive spreadsheet-like editor has been implemented, providing dataset creation and editing directly in the web interface. Font support has been rewritten with full support for UTF-8 character encoding throughout the user interface. Google Web Fonts are now fully supported in the tree text labels. iTOL v4 is the first tool which supports direct visualization of Qiime 2 trees and associated annotations. The user account system has been streamlined and expanded with new navigation options, and currently handles >700 000 trees from more than 40 000 individual users. Full batch access has been implemented allowing programmatic upload and export of trees and annotations. Oxford University Press 2019-07-02 2019-04-01 /pmc/articles/PMC6602468/ /pubmed/30931475 http://dx.doi.org/10.1093/nar/gkz239 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Web Server Issue
Letunic, Ivica
Bork, Peer
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
title Interactive Tree Of Life (iTOL) v4: recent updates and new developments
title_full Interactive Tree Of Life (iTOL) v4: recent updates and new developments
title_fullStr Interactive Tree Of Life (iTOL) v4: recent updates and new developments
title_full_unstemmed Interactive Tree Of Life (iTOL) v4: recent updates and new developments
title_short Interactive Tree Of Life (iTOL) v4: recent updates and new developments
title_sort interactive tree of life (itol) v4: recent updates and new developments
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602468/
https://www.ncbi.nlm.nih.gov/pubmed/30931475
http://dx.doi.org/10.1093/nar/gkz239
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