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Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards

We present a new web application to query and visualize time-series behavioral data: the Pergola web-server. This server provides a user-friendly interface for exploring longitudinal behavioral data taking advantage of the Pergola Python library. Using the server, users can process the data applying...

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Detalles Bibliográficos
Autores principales: Espinosa-Carrasco, Jose, Pulido, Toni Hermoso, Erb, Ionas, Dierssen, Mara, Ponomarenko, Julia, Notredame, Cedric
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602478/
https://www.ncbi.nlm.nih.gov/pubmed/31106365
http://dx.doi.org/10.1093/nar/gkz414
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author Espinosa-Carrasco, Jose
Pulido, Toni Hermoso
Erb, Ionas
Dierssen, Mara
Ponomarenko, Julia
Notredame, Cedric
author_facet Espinosa-Carrasco, Jose
Pulido, Toni Hermoso
Erb, Ionas
Dierssen, Mara
Ponomarenko, Julia
Notredame, Cedric
author_sort Espinosa-Carrasco, Jose
collection PubMed
description We present a new web application to query and visualize time-series behavioral data: the Pergola web-server. This server provides a user-friendly interface for exploring longitudinal behavioral data taking advantage of the Pergola Python library. Using the server, users can process the data applying some basic operations, such as binning or grouping, while formatting the data into existing genomic formats. Thanks to this repurposing of genomics standards, the application automatically renders an interactive data visualization based on sophisticated genome visualization tools. Our tool allows behavioral scientists to share, display and navigate complex behavioral data comprising multiple individuals and multiple data types, in a scalable and flexible manner. A download option allows for further analysis using genomic tools. The server can be a great resource for the field in a time where behavioral science is entering a data-intensive cycle thanks to high-throughput behavioral phenotyping platforms. Pergola is publicly available at http://pergola.crg.eu/.
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spelling pubmed-66024782019-07-05 Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards Espinosa-Carrasco, Jose Pulido, Toni Hermoso Erb, Ionas Dierssen, Mara Ponomarenko, Julia Notredame, Cedric Nucleic Acids Res Web Server Issue We present a new web application to query and visualize time-series behavioral data: the Pergola web-server. This server provides a user-friendly interface for exploring longitudinal behavioral data taking advantage of the Pergola Python library. Using the server, users can process the data applying some basic operations, such as binning or grouping, while formatting the data into existing genomic formats. Thanks to this repurposing of genomics standards, the application automatically renders an interactive data visualization based on sophisticated genome visualization tools. Our tool allows behavioral scientists to share, display and navigate complex behavioral data comprising multiple individuals and multiple data types, in a scalable and flexible manner. A download option allows for further analysis using genomic tools. The server can be a great resource for the field in a time where behavioral science is entering a data-intensive cycle thanks to high-throughput behavioral phenotyping platforms. Pergola is publicly available at http://pergola.crg.eu/. Oxford University Press 2019-07-02 2019-05-20 /pmc/articles/PMC6602478/ /pubmed/31106365 http://dx.doi.org/10.1093/nar/gkz414 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server Issue
Espinosa-Carrasco, Jose
Pulido, Toni Hermoso
Erb, Ionas
Dierssen, Mara
Ponomarenko, Julia
Notredame, Cedric
Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards
title Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards
title_full Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards
title_fullStr Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards
title_full_unstemmed Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards
title_short Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards
title_sort pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602478/
https://www.ncbi.nlm.nih.gov/pubmed/31106365
http://dx.doi.org/10.1093/nar/gkz414
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