The EMBL-EBI search and sequence analysis tools APIs in 2019

The EMBL-EBI provides free access to popular bioinformatics sequence analysis applications as well as to a full-featured text search engine with powerful cross-referencing and data retrieval capabilities. Access to these services is provided via user-friendly web interfaces and via established RESTf...

Descripción completa

Detalles Bibliográficos
Autores principales: Madeira, Fábio, Park, Young mi, Lee, Joon, Buso, Nicola, Gur, Tamer, Madhusoodanan, Nandana, Basutkar, Prasad, Tivey, Adrian R N, Potter, Simon C, Finn, Robert D, Lopez, Rodrigo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Web Server Issue
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602479/
https://www.ncbi.nlm.nih.gov/pubmed/30976793
http://dx.doi.org/10.1093/nar/gkz268
_version_ 1783431385626705920
author Madeira, Fábio
Park, Young mi
Lee, Joon
Buso, Nicola
Gur, Tamer
Madhusoodanan, Nandana
Basutkar, Prasad
Tivey, Adrian R N
Potter, Simon C
Finn, Robert D
Lopez, Rodrigo
author_facet Madeira, Fábio
Park, Young mi
Lee, Joon
Buso, Nicola
Gur, Tamer
Madhusoodanan, Nandana
Basutkar, Prasad
Tivey, Adrian R N
Potter, Simon C
Finn, Robert D
Lopez, Rodrigo
author_sort Madeira, Fábio
collection PubMed
description The EMBL-EBI provides free access to popular bioinformatics sequence analysis applications as well as to a full-featured text search engine with powerful cross-referencing and data retrieval capabilities. Access to these services is provided via user-friendly web interfaces and via established RESTful and SOAP Web Services APIs (https://www.ebi.ac.uk/seqdb/confluence/display/JDSAT/EMBL-EBI+Web+Services+APIs+-+Data+Retrieval). Both systems have been developed with the same core principles that allow them to integrate an ever-increasing volume of biological data, making them an integral part of many popular data resources provided at the EMBL-EBI. Here, we describe the latest improvements made to the frameworks which enhance the interconnectivity between public EMBL-EBI resources and ultimately enhance biological data discoverability, accessibility, interoperability and reusability.
format Online
Article
Text
id pubmed-6602479
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-66024792019-07-05 The EMBL-EBI search and sequence analysis tools APIs in 2019 Madeira, Fábio Park, Young mi Lee, Joon Buso, Nicola Gur, Tamer Madhusoodanan, Nandana Basutkar, Prasad Tivey, Adrian R N Potter, Simon C Finn, Robert D Lopez, Rodrigo Nucleic Acids Res Web Server Issue The EMBL-EBI provides free access to popular bioinformatics sequence analysis applications as well as to a full-featured text search engine with powerful cross-referencing and data retrieval capabilities. Access to these services is provided via user-friendly web interfaces and via established RESTful and SOAP Web Services APIs (https://www.ebi.ac.uk/seqdb/confluence/display/JDSAT/EMBL-EBI+Web+Services+APIs+-+Data+Retrieval). Both systems have been developed with the same core principles that allow them to integrate an ever-increasing volume of biological data, making them an integral part of many popular data resources provided at the EMBL-EBI. Here, we describe the latest improvements made to the frameworks which enhance the interconnectivity between public EMBL-EBI resources and ultimately enhance biological data discoverability, accessibility, interoperability and reusability. Oxford University Press 2019-07-02 2019-04-12 /pmc/articles/PMC6602479/ /pubmed/30976793 http://dx.doi.org/10.1093/nar/gkz268 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server Issue
Madeira, Fábio
Park, Young mi
Lee, Joon
Buso, Nicola
Gur, Tamer
Madhusoodanan, Nandana
Basutkar, Prasad
Tivey, Adrian R N
Potter, Simon C
Finn, Robert D
Lopez, Rodrigo
The EMBL-EBI search and sequence analysis tools APIs in 2019
title The EMBL-EBI search and sequence analysis tools APIs in 2019
title_full The EMBL-EBI search and sequence analysis tools APIs in 2019
title_fullStr The EMBL-EBI search and sequence analysis tools APIs in 2019
title_full_unstemmed The EMBL-EBI search and sequence analysis tools APIs in 2019
title_short The EMBL-EBI search and sequence analysis tools APIs in 2019
title_sort embl-ebi search and sequence analysis tools apis in 2019
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602479/
https://www.ncbi.nlm.nih.gov/pubmed/30976793
http://dx.doi.org/10.1093/nar/gkz268
work_keys_str_mv AT madeirafabio theemblebisearchandsequenceanalysistoolsapisin2019
AT parkyoungmi theemblebisearchandsequenceanalysistoolsapisin2019
AT leejoon theemblebisearchandsequenceanalysistoolsapisin2019
AT busonicola theemblebisearchandsequenceanalysistoolsapisin2019
AT gurtamer theemblebisearchandsequenceanalysistoolsapisin2019
AT madhusoodanannandana theemblebisearchandsequenceanalysistoolsapisin2019
AT basutkarprasad theemblebisearchandsequenceanalysistoolsapisin2019
AT tiveyadrianrn theemblebisearchandsequenceanalysistoolsapisin2019
AT pottersimonc theemblebisearchandsequenceanalysistoolsapisin2019
AT finnrobertd theemblebisearchandsequenceanalysistoolsapisin2019
AT lopezrodrigo theemblebisearchandsequenceanalysistoolsapisin2019
AT madeirafabio emblebisearchandsequenceanalysistoolsapisin2019
AT parkyoungmi emblebisearchandsequenceanalysistoolsapisin2019
AT leejoon emblebisearchandsequenceanalysistoolsapisin2019
AT busonicola emblebisearchandsequenceanalysistoolsapisin2019
AT gurtamer emblebisearchandsequenceanalysistoolsapisin2019
AT madhusoodanannandana emblebisearchandsequenceanalysistoolsapisin2019
AT basutkarprasad emblebisearchandsequenceanalysistoolsapisin2019
AT tiveyadrianrn emblebisearchandsequenceanalysistoolsapisin2019
AT pottersimonc emblebisearchandsequenceanalysistoolsapisin2019
AT finnrobertd emblebisearchandsequenceanalysistoolsapisin2019
AT lopezrodrigo emblebisearchandsequenceanalysistoolsapisin2019

Ejemplares similares