Cargando…

IEDB-AR: immune epitope database—analysis resource in 2019

The Immune Epitope Database Analysis Resource (IEDB-AR, http://tools.iedb.org/) is a companion website to the IEDB that provides computational tools focused on the prediction and analysis of B and T cell epitopes. All of the tools are freely available through the public website and many are also ava...

Descripción completa

Detalles Bibliográficos
Autores principales:	Dhanda, Sandeep Kumar, Mahajan, Swapnil, Paul, Sinu, Yan, Zhen, Kim, Haeuk, Jespersen, Martin Closter, Jurtz, Vanessa, Andreatta, Massimo, Greenbaum, Jason A, Marcatili, Paolo, Sette, Alessandro, Nielsen, Morten, Peters, Bjoern
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2019
Materias:	Web Server Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602498/ https://www.ncbi.nlm.nih.gov/pubmed/31114900 http://dx.doi.org/10.1093/nar/gkz452

Ejemplares similares

BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes
por: Jespersen, Martin Closter, et al.
Publicado: (2017)

The Immune Epitope Database (IEDB): 2018 update
por: Vita, Randi, et al.
Publicado: (2019)

Immune epitope database analysis resource (IEDB-AR)
por: Zhang, Qing, et al.
Publicado: (2008)

LYRA, a webserver for lymphocyte receptor structural modeling
por: Klausen, Michael Schantz, et al.
Publicado: (2015)

Antibody Specific B-Cell Epitope Predictions: Leveraging Information From Antibody-Antigen Protein Complexes
por: Jespersen, Martin Closter, et al.
Publicado: (2019)

Benchmark datasets of immune receptor-epitope structural complexes
por: Mahajan, Swapnil, et al.
Publicado: (2019)

Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database
por: Mahajan, Swapnil, et al.
Publicado: (2018)

NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data
por: Reynisson, Birkir, et al.
Publicado: (2020)

The immune epitope database (IEDB) 3.0
por: Vita, Randi, et al.
Publicado: (2014)

The Immune Epitope Database and Analysis Resource in Epitope Discovery and Synthetic Vaccine Design
por: Fleri, Ward, et al.
Publicado: (2017)

NNAlign: a platform to construct and evaluate artificial neural network models of receptor–ligand interactions
por: Nielsen, Morten, et al.
Publicado: (2017)

GibbsCluster: unsupervised clustering and alignment of peptide sequences
por: Andreatta, Massimo, et al.
Publicado: (2017)

IEDB-3D: structural data within the immune epitope database
por: Ponomarenko, Julia, et al.
Publicado: (2011)

IEDB‐3D 2.0: Structural data analysis within the Immune Epitope Database
por: Mendes, Marcus, et al.
Publicado: (2023)

Query enhancement through the practical application of ontology: the IEDB and OBI
por: Vita, Randi, et al.
Publicado: (2013)

Determination of a Predictive Cleavage Motif for Eluted Major Histocompatibility Complex Class II Ligands
por: Paul, Sinu, et al.
Publicado: (2018)

Navigating diabetes-related immune epitope data: resources and tools provided by the Immune Epitope Database (IEDB)
por: Vaughan, Kerrie, et al.
Publicado: (2013)

T-Epitope Designer: A HLA-peptide binding prediction server
por: Kangueane, Pandjassarame, et al.
Publicado: (2005)

NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning
por: Høie, Magnus Haraldson, et al.
Publicado: (2022)

TCRpMHCmodels: Structural modelling of TCR-pMHC class I complexes
por: Jensen, Kamilla Kjærgaard, et al.
Publicado: (2019)

Identification and visualization of protein binding regions with the ArDock server
por: Reille, Sébastien, et al.
Publicado: (2018)

IGIPT - Integrated genomic island prediction tool
por: Jain, Ruchi, et al.
Publicado: (2011)

Identification of errors in the IEDB using ontologies
por: Vita, Randi, et al.
Publicado: (2018)

SPADE web service for prediction of allergen IgE epitopes
por: Dall’Antonia, Fabio, et al.
Publicado: (2019)

SEPPA 3.0—enhanced spatial epitope prediction enabling glycoprotein antigens
por: Zhou, Chen, et al.
Publicado: (2019)

SEPPA-mAb: spatial epitope prediction of protein antigens for mAbs
por: Qiu, Tianyi, et al.
Publicado: (2023)

Predicting HLA CD4 Immunogenicity in Human Populations
por: Dhanda, Sandeep Kumar, et al.
Publicado: (2018)

InteractomeSeq: a web server for the identification and profiling of domains and epitopes from phage display and next generation sequencing data
por: Puccio, Simone, et al.
Publicado: (2020)

A behind‐the‐scenes tour of the IEDB curation process: an optimized process empirically integrating automation and human curation efforts
por: Salimi, Nima, et al.
Publicado: (2020)

IWS: Integrated web server for protein sequence and structure analysis
por: Shameer, Khader, et al.
Publicado: (2007)

CALCOM: A software for calculating the center of mass of proteins
por: Costantini, Susan, et al.
Publicado: (2008)

GS2PATH: A web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data
por: Yang, Jin Ok, et al.
Publicado: (2007)

LIPPRED: A web server for accurate prediction of lipoprotein signal sequences and cleavage sites
por: Taylor, Paul D, et al.
Publicado: (2006)

A web server for transcription factor binding site prediction
por: Su, Gang, et al.
Publicado: (2006)

SPCalc: A web-based calculator for sample size and power calculations in micro-array studies
por: Qiu, Weiliang, et al.
Publicado: (2006)

GeneVenn - A web application for comparing gene lists using Venn diagrams
por: Pirooznia, Mehdi, et al.
Publicado: (2007)

MAP Kinase analyser: A tool for plant kinase and substrate analysis
por: Samantaray, Saranga Dhar, et al.
Publicado: (2011)

OntoVisT: A general purpose Ontological Visualization Tool
por: Srivastava, Alok Kumar, et al.
Publicado: (2011)

The microarray manual curation tool (MMCT): A Web server for microarray probe evaluations
por: Tulpan, Dan, et al.
Publicado: (2010)

WebFARM: web server for finite automated restriction mapping
por: Singh, Tiratha Raj
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_anj307e5egs8pc8p9o5f1lkhs1