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Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning

Computational modeling of chemical and biological systems at atomic resolution is a crucial tool in the chemist’s toolset. The use of computer simulations requires a balance between cost and accuracy: quantum-mechanical methods provide high accuracy but are computationally expensive and scale poorly...

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Autores principales: Smith, Justin S., Nebgen, Benjamin T., Zubatyuk, Roman, Lubbers, Nicholas, Devereux, Christian, Barros, Kipton, Tretiak, Sergei, Isayev, Olexandr, Roitberg, Adrian E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602931/
https://www.ncbi.nlm.nih.gov/pubmed/31263102
http://dx.doi.org/10.1038/s41467-019-10827-4
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author Smith, Justin S.
Nebgen, Benjamin T.
Zubatyuk, Roman
Lubbers, Nicholas
Devereux, Christian
Barros, Kipton
Tretiak, Sergei
Isayev, Olexandr
Roitberg, Adrian E.
author_facet Smith, Justin S.
Nebgen, Benjamin T.
Zubatyuk, Roman
Lubbers, Nicholas
Devereux, Christian
Barros, Kipton
Tretiak, Sergei
Isayev, Olexandr
Roitberg, Adrian E.
author_sort Smith, Justin S.
collection PubMed
description Computational modeling of chemical and biological systems at atomic resolution is a crucial tool in the chemist’s toolset. The use of computer simulations requires a balance between cost and accuracy: quantum-mechanical methods provide high accuracy but are computationally expensive and scale poorly to large systems, while classical force fields are cheap and scalable, but lack transferability to new systems. Machine learning can be used to achieve the best of both approaches. Here we train a general-purpose neural network potential (ANI-1ccx) that approaches CCSD(T)/CBS accuracy on benchmarks for reaction thermochemistry, isomerization, and drug-like molecular torsions. This is achieved by training a network to DFT data then using transfer learning techniques to retrain on a dataset of gold standard QM calculations (CCSD(T)/CBS) that optimally spans chemical space. The resulting potential is broadly applicable to materials science, biology, and chemistry, and billions of times faster than CCSD(T)/CBS calculations.
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spelling pubmed-66029312019-07-03 Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning Smith, Justin S. Nebgen, Benjamin T. Zubatyuk, Roman Lubbers, Nicholas Devereux, Christian Barros, Kipton Tretiak, Sergei Isayev, Olexandr Roitberg, Adrian E. Nat Commun Article Computational modeling of chemical and biological systems at atomic resolution is a crucial tool in the chemist’s toolset. The use of computer simulations requires a balance between cost and accuracy: quantum-mechanical methods provide high accuracy but are computationally expensive and scale poorly to large systems, while classical force fields are cheap and scalable, but lack transferability to new systems. Machine learning can be used to achieve the best of both approaches. Here we train a general-purpose neural network potential (ANI-1ccx) that approaches CCSD(T)/CBS accuracy on benchmarks for reaction thermochemistry, isomerization, and drug-like molecular torsions. This is achieved by training a network to DFT data then using transfer learning techniques to retrain on a dataset of gold standard QM calculations (CCSD(T)/CBS) that optimally spans chemical space. The resulting potential is broadly applicable to materials science, biology, and chemistry, and billions of times faster than CCSD(T)/CBS calculations. Nature Publishing Group UK 2019-07-01 /pmc/articles/PMC6602931/ /pubmed/31263102 http://dx.doi.org/10.1038/s41467-019-10827-4 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Smith, Justin S.
Nebgen, Benjamin T.
Zubatyuk, Roman
Lubbers, Nicholas
Devereux, Christian
Barros, Kipton
Tretiak, Sergei
Isayev, Olexandr
Roitberg, Adrian E.
Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning
title Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning
title_full Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning
title_fullStr Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning
title_full_unstemmed Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning
title_short Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning
title_sort approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602931/
https://www.ncbi.nlm.nih.gov/pubmed/31263102
http://dx.doi.org/10.1038/s41467-019-10827-4
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