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Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning
Computational modeling of chemical and biological systems at atomic resolution is a crucial tool in the chemist’s toolset. The use of computer simulations requires a balance between cost and accuracy: quantum-mechanical methods provide high accuracy but are computationally expensive and scale poorly...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602931/ https://www.ncbi.nlm.nih.gov/pubmed/31263102 http://dx.doi.org/10.1038/s41467-019-10827-4 |
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author | Smith, Justin S. Nebgen, Benjamin T. Zubatyuk, Roman Lubbers, Nicholas Devereux, Christian Barros, Kipton Tretiak, Sergei Isayev, Olexandr Roitberg, Adrian E. |
author_facet | Smith, Justin S. Nebgen, Benjamin T. Zubatyuk, Roman Lubbers, Nicholas Devereux, Christian Barros, Kipton Tretiak, Sergei Isayev, Olexandr Roitberg, Adrian E. |
author_sort | Smith, Justin S. |
collection | PubMed |
description | Computational modeling of chemical and biological systems at atomic resolution is a crucial tool in the chemist’s toolset. The use of computer simulations requires a balance between cost and accuracy: quantum-mechanical methods provide high accuracy but are computationally expensive and scale poorly to large systems, while classical force fields are cheap and scalable, but lack transferability to new systems. Machine learning can be used to achieve the best of both approaches. Here we train a general-purpose neural network potential (ANI-1ccx) that approaches CCSD(T)/CBS accuracy on benchmarks for reaction thermochemistry, isomerization, and drug-like molecular torsions. This is achieved by training a network to DFT data then using transfer learning techniques to retrain on a dataset of gold standard QM calculations (CCSD(T)/CBS) that optimally spans chemical space. The resulting potential is broadly applicable to materials science, biology, and chemistry, and billions of times faster than CCSD(T)/CBS calculations. |
format | Online Article Text |
id | pubmed-6602931 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-66029312019-07-03 Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning Smith, Justin S. Nebgen, Benjamin T. Zubatyuk, Roman Lubbers, Nicholas Devereux, Christian Barros, Kipton Tretiak, Sergei Isayev, Olexandr Roitberg, Adrian E. Nat Commun Article Computational modeling of chemical and biological systems at atomic resolution is a crucial tool in the chemist’s toolset. The use of computer simulations requires a balance between cost and accuracy: quantum-mechanical methods provide high accuracy but are computationally expensive and scale poorly to large systems, while classical force fields are cheap and scalable, but lack transferability to new systems. Machine learning can be used to achieve the best of both approaches. Here we train a general-purpose neural network potential (ANI-1ccx) that approaches CCSD(T)/CBS accuracy on benchmarks for reaction thermochemistry, isomerization, and drug-like molecular torsions. This is achieved by training a network to DFT data then using transfer learning techniques to retrain on a dataset of gold standard QM calculations (CCSD(T)/CBS) that optimally spans chemical space. The resulting potential is broadly applicable to materials science, biology, and chemistry, and billions of times faster than CCSD(T)/CBS calculations. Nature Publishing Group UK 2019-07-01 /pmc/articles/PMC6602931/ /pubmed/31263102 http://dx.doi.org/10.1038/s41467-019-10827-4 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Smith, Justin S. Nebgen, Benjamin T. Zubatyuk, Roman Lubbers, Nicholas Devereux, Christian Barros, Kipton Tretiak, Sergei Isayev, Olexandr Roitberg, Adrian E. Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning |
title | Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning |
title_full | Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning |
title_fullStr | Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning |
title_full_unstemmed | Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning |
title_short | Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning |
title_sort | approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602931/ https://www.ncbi.nlm.nih.gov/pubmed/31263102 http://dx.doi.org/10.1038/s41467-019-10827-4 |
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