Cargando…

The Effects of Plumbagin on Pancreatic Cancer: A Mechanistic Network Pharmacology Approach

BACKGROUND: This study aimed to use a network pharmacology approach to establish the effects of plumbagin on pancreatic cancer (PC) and to predict core targets and biological functions, pathways, and mechanisms of action. MATERIAL/METHODS: Genes associated with the pathogenesis of PC were obtained f...

Descripción completa

Detalles Bibliográficos
Autores principales: Pan, Qijin, Zhou, Rui, Su, Min, Li, Rong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Scientific Literature, Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6604675/
https://www.ncbi.nlm.nih.gov/pubmed/31230062
http://dx.doi.org/10.12659/MSM.917240
_version_ 1783431746375647232
author Pan, Qijin
Zhou, Rui
Su, Min
Li, Rong
author_facet Pan, Qijin
Zhou, Rui
Su, Min
Li, Rong
author_sort Pan, Qijin
collection PubMed
description BACKGROUND: This study aimed to use a network pharmacology approach to establish the effects of plumbagin on pancreatic cancer (PC) and to predict core targets and biological functions, pathways, and mechanisms of action. MATERIAL/METHODS: Genes associated with the pathogenesis of PC were obtained from a database of gene-disease associations (DisGeNET). Putative genes associated with plumbagin were identified from the databases of drug target identification (PharmMapper), target prediction of bioactive components (SwissTargetPrediction), and comprehensive drug target information (DrugBank). PC targets of plumbagin were harvested by using a functional enrichment analysis tool (FunRich). The data of function-related protein-protein interactions (PPIs) with a confidence score >0.9 were obtained by using functional protein association networks (STRING). The network interactions of plumbagin and PC targets and function-related proteins were constructed through complex network analysis and visualization (Cytoscape). The Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analysis were used to identify the effects of plumbagin. RESULTS: The most important biotargets for plumbagin in PC were identified as TP53, MAPK1, BCL2, and IL6. A total of 1,731 annotations and 121 enriched pathways for plumbagin and PC were identified by KEGG and GO analysis. The top 10 signaling pathways of plumbagin and PC were screened, followed by identification of biological components and functions. CONCLUSIONS: Network pharmacology established the effects of plumbagin on PC, predicted core targets, biological functions, pathways, and mechanisms of action. Further studies are needed to validate these predictive biotargets in PC.
format Online
Article
Text
id pubmed-6604675
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher International Scientific Literature, Inc.
record_format MEDLINE/PubMed
spelling pubmed-66046752019-07-17 The Effects of Plumbagin on Pancreatic Cancer: A Mechanistic Network Pharmacology Approach Pan, Qijin Zhou, Rui Su, Min Li, Rong Med Sci Monit Lab/In Vitro Research BACKGROUND: This study aimed to use a network pharmacology approach to establish the effects of plumbagin on pancreatic cancer (PC) and to predict core targets and biological functions, pathways, and mechanisms of action. MATERIAL/METHODS: Genes associated with the pathogenesis of PC were obtained from a database of gene-disease associations (DisGeNET). Putative genes associated with plumbagin were identified from the databases of drug target identification (PharmMapper), target prediction of bioactive components (SwissTargetPrediction), and comprehensive drug target information (DrugBank). PC targets of plumbagin were harvested by using a functional enrichment analysis tool (FunRich). The data of function-related protein-protein interactions (PPIs) with a confidence score >0.9 were obtained by using functional protein association networks (STRING). The network interactions of plumbagin and PC targets and function-related proteins were constructed through complex network analysis and visualization (Cytoscape). The Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analysis were used to identify the effects of plumbagin. RESULTS: The most important biotargets for plumbagin in PC were identified as TP53, MAPK1, BCL2, and IL6. A total of 1,731 annotations and 121 enriched pathways for plumbagin and PC were identified by KEGG and GO analysis. The top 10 signaling pathways of plumbagin and PC were screened, followed by identification of biological components and functions. CONCLUSIONS: Network pharmacology established the effects of plumbagin on PC, predicted core targets, biological functions, pathways, and mechanisms of action. Further studies are needed to validate these predictive biotargets in PC. International Scientific Literature, Inc. 2019-06-23 /pmc/articles/PMC6604675/ /pubmed/31230062 http://dx.doi.org/10.12659/MSM.917240 Text en © Med Sci Monit, 2019 This work is licensed under Creative Common Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) )
spellingShingle Lab/In Vitro Research
Pan, Qijin
Zhou, Rui
Su, Min
Li, Rong
The Effects of Plumbagin on Pancreatic Cancer: A Mechanistic Network Pharmacology Approach
title The Effects of Plumbagin on Pancreatic Cancer: A Mechanistic Network Pharmacology Approach
title_full The Effects of Plumbagin on Pancreatic Cancer: A Mechanistic Network Pharmacology Approach
title_fullStr The Effects of Plumbagin on Pancreatic Cancer: A Mechanistic Network Pharmacology Approach
title_full_unstemmed The Effects of Plumbagin on Pancreatic Cancer: A Mechanistic Network Pharmacology Approach
title_short The Effects of Plumbagin on Pancreatic Cancer: A Mechanistic Network Pharmacology Approach
title_sort effects of plumbagin on pancreatic cancer: a mechanistic network pharmacology approach
topic Lab/In Vitro Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6604675/
https://www.ncbi.nlm.nih.gov/pubmed/31230062
http://dx.doi.org/10.12659/MSM.917240
work_keys_str_mv AT panqijin theeffectsofplumbaginonpancreaticcanceramechanisticnetworkpharmacologyapproach
AT zhourui theeffectsofplumbaginonpancreaticcanceramechanisticnetworkpharmacologyapproach
AT sumin theeffectsofplumbaginonpancreaticcanceramechanisticnetworkpharmacologyapproach
AT lirong theeffectsofplumbaginonpancreaticcanceramechanisticnetworkpharmacologyapproach
AT panqijin effectsofplumbaginonpancreaticcanceramechanisticnetworkpharmacologyapproach
AT zhourui effectsofplumbaginonpancreaticcanceramechanisticnetworkpharmacologyapproach
AT sumin effectsofplumbaginonpancreaticcanceramechanisticnetworkpharmacologyapproach
AT lirong effectsofplumbaginonpancreaticcanceramechanisticnetworkpharmacologyapproach