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The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling

Traditional biochemical research has resulted in a good understanding of many aspects of metabolism. However, this reductionist approach is time consuming and requires substantial resources, thus raising the question whether modern metabolomics and genomics should take over and replace the targeted...

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Autores principales: Downs, Diana M., Bazurto, Jannell V., Gupta, Anuj, Fonseca, Luis L., Voit, Eberhard O.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AIMS Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6604926/
https://www.ncbi.nlm.nih.gov/pubmed/31294216
http://dx.doi.org/10.3934/microbiol.2018.2.289
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author Downs, Diana M.
Bazurto, Jannell V.
Gupta, Anuj
Fonseca, Luis L.
Voit, Eberhard O.
author_facet Downs, Diana M.
Bazurto, Jannell V.
Gupta, Anuj
Fonseca, Luis L.
Voit, Eberhard O.
author_sort Downs, Diana M.
collection PubMed
description Traditional biochemical research has resulted in a good understanding of many aspects of metabolism. However, this reductionist approach is time consuming and requires substantial resources, thus raising the question whether modern metabolomics and genomics should take over and replace the targeted experiments of old. We proffer that such a replacement is neither feasible not desirable and propose instead the tight integration of modern, system-wide omics with traditional experimental bench science and dedicated computational approaches. This integration is an important prerequisite toward the optimal acquisition of knowledge regarding metabolism and physiology in health and disease. The commentary describes advantages and drawbacks of current approaches to assessing metabolism and highlights the challenges to be overcome as we strive to achieve a deeper level of metabolic understanding in the future.
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spelling pubmed-66049262019-07-10 The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling Downs, Diana M. Bazurto, Jannell V. Gupta, Anuj Fonseca, Luis L. Voit, Eberhard O. AIMS Microbiol Commentary Traditional biochemical research has resulted in a good understanding of many aspects of metabolism. However, this reductionist approach is time consuming and requires substantial resources, thus raising the question whether modern metabolomics and genomics should take over and replace the targeted experiments of old. We proffer that such a replacement is neither feasible not desirable and propose instead the tight integration of modern, system-wide omics with traditional experimental bench science and dedicated computational approaches. This integration is an important prerequisite toward the optimal acquisition of knowledge regarding metabolism and physiology in health and disease. The commentary describes advantages and drawbacks of current approaches to assessing metabolism and highlights the challenges to be overcome as we strive to achieve a deeper level of metabolic understanding in the future. AIMS Press 2018-04-08 /pmc/articles/PMC6604926/ /pubmed/31294216 http://dx.doi.org/10.3934/microbiol.2018.2.289 Text en © 2018 the Author(s), licensee AIMS Press This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0)
spellingShingle Commentary
Downs, Diana M.
Bazurto, Jannell V.
Gupta, Anuj
Fonseca, Luis L.
Voit, Eberhard O.
The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling
title The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling
title_full The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling
title_fullStr The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling
title_full_unstemmed The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling
title_short The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling
title_sort three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6604926/
https://www.ncbi.nlm.nih.gov/pubmed/31294216
http://dx.doi.org/10.3934/microbiol.2018.2.289
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