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Constructing personalized longitudinal holo’omes of colon cancer-prone humans and their modeling in flies and mice
Specific host genes and intestinal microbes, dysbiosis, aberrant immune responses and lifestyle may contribute to intestinal inflammation and cancer, but each of these parameters does not suffice to explain why sporadic colon cancer develops at an old age and only in some of the people with the same...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609240/ https://www.ncbi.nlm.nih.gov/pubmed/31289620 http://dx.doi.org/10.18632/oncotarget.6463 |
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author | Panagi, Myrofora Georgila, Konstantina Eliopoulos, Aristides G. Apidianakis, Yiorgos |
author_facet | Panagi, Myrofora Georgila, Konstantina Eliopoulos, Aristides G. Apidianakis, Yiorgos |
author_sort | Panagi, Myrofora |
collection | PubMed |
description | Specific host genes and intestinal microbes, dysbiosis, aberrant immune responses and lifestyle may contribute to intestinal inflammation and cancer, but each of these parameters does not suffice to explain why sporadic colon cancer develops at an old age and only in some of the people with the same profile. To improve our understanding, longitudinal multi-omic and personalized studies will help to pinpoint combinations of host genetic, epigenetic, microbiota and lifestyle-shaped factors, such as blood factors and metabolites that change as we age. The intestinal holo’ome – defined as the combination of host and microbiota genomes, transcriptomes, proteomes, and metabolomes – may be imbalanced and shift to disease when the wrong host gene expression profile meets the wrong microbiota composition. These imbalances can be triggered by the dietary- or lifestyle-shaped intestinal environment. Accordingly, personalized human intestinal holo’omes will differ significantly among individuals and between two critical points in time: long before and upon the onset of disease. Detrimental combinations of factors could therefore be pinpointed computationally and validated using animal models, such as mice and flies. Finally, treatment strategies that break these harmful combinations could be tested in clinical trials. Herein we provide an overview of the literature and a roadmap to this end. |
format | Online Article Text |
id | pubmed-6609240 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-66092402019-07-09 Constructing personalized longitudinal holo’omes of colon cancer-prone humans and their modeling in flies and mice Panagi, Myrofora Georgila, Konstantina Eliopoulos, Aristides G. Apidianakis, Yiorgos Oncotarget Review Specific host genes and intestinal microbes, dysbiosis, aberrant immune responses and lifestyle may contribute to intestinal inflammation and cancer, but each of these parameters does not suffice to explain why sporadic colon cancer develops at an old age and only in some of the people with the same profile. To improve our understanding, longitudinal multi-omic and personalized studies will help to pinpoint combinations of host genetic, epigenetic, microbiota and lifestyle-shaped factors, such as blood factors and metabolites that change as we age. The intestinal holo’ome – defined as the combination of host and microbiota genomes, transcriptomes, proteomes, and metabolomes – may be imbalanced and shift to disease when the wrong host gene expression profile meets the wrong microbiota composition. These imbalances can be triggered by the dietary- or lifestyle-shaped intestinal environment. Accordingly, personalized human intestinal holo’omes will differ significantly among individuals and between two critical points in time: long before and upon the onset of disease. Detrimental combinations of factors could therefore be pinpointed computationally and validated using animal models, such as mice and flies. Finally, treatment strategies that break these harmful combinations could be tested in clinical trials. Herein we provide an overview of the literature and a roadmap to this end. Impact Journals LLC 2015-12-04 /pmc/articles/PMC6609240/ /pubmed/31289620 http://dx.doi.org/10.18632/oncotarget.6463 Text en Copyright: © 2019 Panagi et al. http://creativecommons.org/licenses/by/3.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC-BY), which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Review Panagi, Myrofora Georgila, Konstantina Eliopoulos, Aristides G. Apidianakis, Yiorgos Constructing personalized longitudinal holo’omes of colon cancer-prone humans and their modeling in flies and mice |
title | Constructing personalized longitudinal holo’omes of colon cancer-prone humans and their modeling in flies and mice |
title_full | Constructing personalized longitudinal holo’omes of colon cancer-prone humans and their modeling in flies and mice |
title_fullStr | Constructing personalized longitudinal holo’omes of colon cancer-prone humans and their modeling in flies and mice |
title_full_unstemmed | Constructing personalized longitudinal holo’omes of colon cancer-prone humans and their modeling in flies and mice |
title_short | Constructing personalized longitudinal holo’omes of colon cancer-prone humans and their modeling in flies and mice |
title_sort | constructing personalized longitudinal holo’omes of colon cancer-prone humans and their modeling in flies and mice |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609240/ https://www.ncbi.nlm.nih.gov/pubmed/31289620 http://dx.doi.org/10.18632/oncotarget.6463 |
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