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Network analysis of aging acceleration reveals systematic properties of 11 types of cancers
Cancers are known to be associated with accelerated aging, but to date, there has been a paucity of systematic and in‐depth studies of the correlation between aging and cancer. DNA methylation (DNAm) profiles can be used as aging markers and utilized to construct aging predictors. In this study, we...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609580/ https://www.ncbi.nlm.nih.gov/pubmed/31131513 http://dx.doi.org/10.1002/2211-5463.12679 |
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author | Xia, Xiaoqiong Zhou, Mengyu Yan, Hao Li, Sijia Sha, Xianzheng Wang, Yin |
author_facet | Xia, Xiaoqiong Zhou, Mengyu Yan, Hao Li, Sijia Sha, Xianzheng Wang, Yin |
author_sort | Xia, Xiaoqiong |
collection | PubMed |
description | Cancers are known to be associated with accelerated aging, but to date, there has been a paucity of systematic and in‐depth studies of the correlation between aging and cancer. DNA methylation (DNAm) profiles can be used as aging markers and utilized to construct aging predictors. In this study, we downloaded 333 paired samples of DNAm, expression and mutation profiles encompassing 11 types of tissues from The Cancer Genome Atlas public access portal. The DNAm aging scores were calculated using the Support Vector Machine regression model. The DNAm aging scores of cancers revealed significant aging acceleration compared to adjacent normal tissues. Aging acceleration‐associated mutation modules and expression modules were identified in 11 types of cancers. In addition, we constructed bipartite networks of mutations and expression, and the differential expression modules related to aging‐associated mutations were selected in 11 types of cancers using the expression quantitative trait locus method. The results of enrichment analyses also identified common functions across cancers and cancer‐specific characteristics of aging acceleration. The aging acceleration interaction network across cancers suggested a core status of thyroid carcinoma and neck squamous cell carcinoma in the aging process. In summary, we have identified correlations between aging and cancers and revealed insights into the biological functions of the modules in aging and cancers. |
format | Online Article Text |
id | pubmed-6609580 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-66095802019-07-16 Network analysis of aging acceleration reveals systematic properties of 11 types of cancers Xia, Xiaoqiong Zhou, Mengyu Yan, Hao Li, Sijia Sha, Xianzheng Wang, Yin FEBS Open Bio Research Articles Cancers are known to be associated with accelerated aging, but to date, there has been a paucity of systematic and in‐depth studies of the correlation between aging and cancer. DNA methylation (DNAm) profiles can be used as aging markers and utilized to construct aging predictors. In this study, we downloaded 333 paired samples of DNAm, expression and mutation profiles encompassing 11 types of tissues from The Cancer Genome Atlas public access portal. The DNAm aging scores were calculated using the Support Vector Machine regression model. The DNAm aging scores of cancers revealed significant aging acceleration compared to adjacent normal tissues. Aging acceleration‐associated mutation modules and expression modules were identified in 11 types of cancers. In addition, we constructed bipartite networks of mutations and expression, and the differential expression modules related to aging‐associated mutations were selected in 11 types of cancers using the expression quantitative trait locus method. The results of enrichment analyses also identified common functions across cancers and cancer‐specific characteristics of aging acceleration. The aging acceleration interaction network across cancers suggested a core status of thyroid carcinoma and neck squamous cell carcinoma in the aging process. In summary, we have identified correlations between aging and cancers and revealed insights into the biological functions of the modules in aging and cancers. John Wiley and Sons Inc. 2019-06-24 /pmc/articles/PMC6609580/ /pubmed/31131513 http://dx.doi.org/10.1002/2211-5463.12679 Text en © 2019 The Authors. Published by FEBS Press and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Xia, Xiaoqiong Zhou, Mengyu Yan, Hao Li, Sijia Sha, Xianzheng Wang, Yin Network analysis of aging acceleration reveals systematic properties of 11 types of cancers |
title | Network analysis of aging acceleration reveals systematic properties of 11 types of cancers |
title_full | Network analysis of aging acceleration reveals systematic properties of 11 types of cancers |
title_fullStr | Network analysis of aging acceleration reveals systematic properties of 11 types of cancers |
title_full_unstemmed | Network analysis of aging acceleration reveals systematic properties of 11 types of cancers |
title_short | Network analysis of aging acceleration reveals systematic properties of 11 types of cancers |
title_sort | network analysis of aging acceleration reveals systematic properties of 11 types of cancers |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609580/ https://www.ncbi.nlm.nih.gov/pubmed/31131513 http://dx.doi.org/10.1002/2211-5463.12679 |
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