Cargando…
Assessing radiomic feature robustness to interpolation in (18)F-FDG PET imaging
Radiomic studies link quantitative imaging features to patient outcomes in an effort to personalise treatment in oncology. To be clinically useful, a radiomic feature must be robust to image processing steps, which has made robustness testing a necessity for many technical aspects of feature extract...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609613/ https://www.ncbi.nlm.nih.gov/pubmed/31273242 http://dx.doi.org/10.1038/s41598-019-46030-0 |
_version_ | 1783432344248516608 |
---|---|
author | Whybra, Philip Parkinson, Craig Foley, Kieran Staffurth, John Spezi, Emiliano |
author_facet | Whybra, Philip Parkinson, Craig Foley, Kieran Staffurth, John Spezi, Emiliano |
author_sort | Whybra, Philip |
collection | PubMed |
description | Radiomic studies link quantitative imaging features to patient outcomes in an effort to personalise treatment in oncology. To be clinically useful, a radiomic feature must be robust to image processing steps, which has made robustness testing a necessity for many technical aspects of feature extraction. We assessed the stability of radiomic features to interpolation processing and categorised features based on stable, systematic, or unstable responses. Here, (18)F-fluorodeoxyglucose ((18)F-FDG) PET images for 441 oesophageal cancer patients (split: testing = 353, validation = 88) were resampled to 6 isotropic voxel sizes (1.5 mm, 1.8 mm, 2.0 mm, 2.2 mm, 2.5 mm, 2.7 mm) and 141 features were extracted from each volume of interest (VOI). Features were categorised into four groups with two statistical tests. Feature reliability was analysed using an intraclass correlation coefficient (ICC) and patient ranking consistency was assessed using a Spearman’s rank correlation coefficient (ρ). We categorised 93 features robust and 6 limited robustness (stable responses), 34 potentially correctable (systematic responses), and 8 not robust (unstable responses). We developed a correction technique for features with potential systematic variation that used surface fits to link voxel size and percentage change in feature value. Twenty-nine potentially correctable features were re-categorised to robust for the validation dataset, after applying corrections defined by surface fits generated on the testing dataset. Furthermore, we found the choice of interpolation algorithm alone (spline vs trilinear) resulted in large variation in values for a number of features but the response categorisations remained constant. This study attempted to quantify the diverse response of radiomics features commonly found in (18)F-FDG PET clinical modelling to isotropic voxel size interpolation. |
format | Online Article Text |
id | pubmed-6609613 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-66096132019-07-14 Assessing radiomic feature robustness to interpolation in (18)F-FDG PET imaging Whybra, Philip Parkinson, Craig Foley, Kieran Staffurth, John Spezi, Emiliano Sci Rep Article Radiomic studies link quantitative imaging features to patient outcomes in an effort to personalise treatment in oncology. To be clinically useful, a radiomic feature must be robust to image processing steps, which has made robustness testing a necessity for many technical aspects of feature extraction. We assessed the stability of radiomic features to interpolation processing and categorised features based on stable, systematic, or unstable responses. Here, (18)F-fluorodeoxyglucose ((18)F-FDG) PET images for 441 oesophageal cancer patients (split: testing = 353, validation = 88) were resampled to 6 isotropic voxel sizes (1.5 mm, 1.8 mm, 2.0 mm, 2.2 mm, 2.5 mm, 2.7 mm) and 141 features were extracted from each volume of interest (VOI). Features were categorised into four groups with two statistical tests. Feature reliability was analysed using an intraclass correlation coefficient (ICC) and patient ranking consistency was assessed using a Spearman’s rank correlation coefficient (ρ). We categorised 93 features robust and 6 limited robustness (stable responses), 34 potentially correctable (systematic responses), and 8 not robust (unstable responses). We developed a correction technique for features with potential systematic variation that used surface fits to link voxel size and percentage change in feature value. Twenty-nine potentially correctable features were re-categorised to robust for the validation dataset, after applying corrections defined by surface fits generated on the testing dataset. Furthermore, we found the choice of interpolation algorithm alone (spline vs trilinear) resulted in large variation in values for a number of features but the response categorisations remained constant. This study attempted to quantify the diverse response of radiomics features commonly found in (18)F-FDG PET clinical modelling to isotropic voxel size interpolation. Nature Publishing Group UK 2019-07-04 /pmc/articles/PMC6609613/ /pubmed/31273242 http://dx.doi.org/10.1038/s41598-019-46030-0 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Whybra, Philip Parkinson, Craig Foley, Kieran Staffurth, John Spezi, Emiliano Assessing radiomic feature robustness to interpolation in (18)F-FDG PET imaging |
title | Assessing radiomic feature robustness to interpolation in (18)F-FDG PET imaging |
title_full | Assessing radiomic feature robustness to interpolation in (18)F-FDG PET imaging |
title_fullStr | Assessing radiomic feature robustness to interpolation in (18)F-FDG PET imaging |
title_full_unstemmed | Assessing radiomic feature robustness to interpolation in (18)F-FDG PET imaging |
title_short | Assessing radiomic feature robustness to interpolation in (18)F-FDG PET imaging |
title_sort | assessing radiomic feature robustness to interpolation in (18)f-fdg pet imaging |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609613/ https://www.ncbi.nlm.nih.gov/pubmed/31273242 http://dx.doi.org/10.1038/s41598-019-46030-0 |
work_keys_str_mv | AT whybraphilip assessingradiomicfeaturerobustnesstointerpolationin18ffdgpetimaging AT parkinsoncraig assessingradiomicfeaturerobustnesstointerpolationin18ffdgpetimaging AT foleykieran assessingradiomicfeaturerobustnesstointerpolationin18ffdgpetimaging AT staffurthjohn assessingradiomicfeaturerobustnesstointerpolationin18ffdgpetimaging AT speziemiliano assessingradiomicfeaturerobustnesstointerpolationin18ffdgpetimaging |