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Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map
White matter hyperintensities (WMH) appear as regions of abnormally high signal intensity on T2-weighted magnetic resonance image (MRI) sequences. In particular, WMH have been noteworthy in age-related neuroscience for being a crucial biomarker for all types of dementia and brain aging processes. Th...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6610522/ https://www.ncbi.nlm.nih.gov/pubmed/31316369 http://dx.doi.org/10.3389/fnagi.2019.00150 |
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author | Jeong, Yunhee Rachmadi, Muhammad Febrian Valdés-Hernández, Maria del C. Komura, Taku |
author_facet | Jeong, Yunhee Rachmadi, Muhammad Febrian Valdés-Hernández, Maria del C. Komura, Taku |
author_sort | Jeong, Yunhee |
collection | PubMed |
description | White matter hyperintensities (WMH) appear as regions of abnormally high signal intensity on T2-weighted magnetic resonance image (MRI) sequences. In particular, WMH have been noteworthy in age-related neuroscience for being a crucial biomarker for all types of dementia and brain aging processes. The automatic WMH segmentation is challenging because of their variable intensity range, size and shape. U-Net tackles this problem through the dense prediction and has shown competitive performances not only on WMH segmentation/detection but also on varied image segmentation tasks. However, its network architecture is high complex. In this study, we propose the use of Saliency U-Net and Irregularity map (IAM) to decrease the U-Net architectural complexity without performance loss. We trained Saliency U-Net using both: a T2-FLAIR MRI sequence and its correspondent IAM. Since IAM guides locating image intensity irregularities, in which WMH are possibly included, in the MRI slice, Saliency U-Net performs better than the original U-Net trained only using T2-FLAIR. The best performance was achieved with fewer parameters and shorter training time. Moreover, the application of dilated convolution enhanced Saliency U-Net by recognizing the shape of large WMH more accurately through multi-context learning. This network named Dilated Saliency U-Net improved Dice coefficient score to 0.5588 which was the best score among our experimental models, and recorded a relatively good sensitivity of 0.4747 with the shortest training time and the least number of parameters. In conclusion, based on our experimental results, incorporating IAM through Dilated Saliency U-Net resulted an appropriate approach for WMH segmentation. |
format | Online Article Text |
id | pubmed-6610522 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-66105222019-07-17 Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map Jeong, Yunhee Rachmadi, Muhammad Febrian Valdés-Hernández, Maria del C. Komura, Taku Front Aging Neurosci Neuroscience White matter hyperintensities (WMH) appear as regions of abnormally high signal intensity on T2-weighted magnetic resonance image (MRI) sequences. In particular, WMH have been noteworthy in age-related neuroscience for being a crucial biomarker for all types of dementia and brain aging processes. The automatic WMH segmentation is challenging because of their variable intensity range, size and shape. U-Net tackles this problem through the dense prediction and has shown competitive performances not only on WMH segmentation/detection but also on varied image segmentation tasks. However, its network architecture is high complex. In this study, we propose the use of Saliency U-Net and Irregularity map (IAM) to decrease the U-Net architectural complexity without performance loss. We trained Saliency U-Net using both: a T2-FLAIR MRI sequence and its correspondent IAM. Since IAM guides locating image intensity irregularities, in which WMH are possibly included, in the MRI slice, Saliency U-Net performs better than the original U-Net trained only using T2-FLAIR. The best performance was achieved with fewer parameters and shorter training time. Moreover, the application of dilated convolution enhanced Saliency U-Net by recognizing the shape of large WMH more accurately through multi-context learning. This network named Dilated Saliency U-Net improved Dice coefficient score to 0.5588 which was the best score among our experimental models, and recorded a relatively good sensitivity of 0.4747 with the shortest training time and the least number of parameters. In conclusion, based on our experimental results, incorporating IAM through Dilated Saliency U-Net resulted an appropriate approach for WMH segmentation. Frontiers Media S.A. 2019-06-27 /pmc/articles/PMC6610522/ /pubmed/31316369 http://dx.doi.org/10.3389/fnagi.2019.00150 Text en Copyright © 2019 Jeong, Rachmadi, Valdés-Hernández and Komura. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Jeong, Yunhee Rachmadi, Muhammad Febrian Valdés-Hernández, Maria del C. Komura, Taku Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map |
title | Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map |
title_full | Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map |
title_fullStr | Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map |
title_full_unstemmed | Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map |
title_short | Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map |
title_sort | dilated saliency u-net for white matter hyperintensities segmentation using irregularity age map |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6610522/ https://www.ncbi.nlm.nih.gov/pubmed/31316369 http://dx.doi.org/10.3389/fnagi.2019.00150 |
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