Cargando…

Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map

White matter hyperintensities (WMH) appear as regions of abnormally high signal intensity on T2-weighted magnetic resonance image (MRI) sequences. In particular, WMH have been noteworthy in age-related neuroscience for being a crucial biomarker for all types of dementia and brain aging processes. Th...

Descripción completa

Detalles Bibliográficos
Autores principales: Jeong, Yunhee, Rachmadi, Muhammad Febrian, Valdés-Hernández, Maria del C., Komura, Taku
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6610522/
https://www.ncbi.nlm.nih.gov/pubmed/31316369
http://dx.doi.org/10.3389/fnagi.2019.00150
_version_ 1783432525578764288
author Jeong, Yunhee
Rachmadi, Muhammad Febrian
Valdés-Hernández, Maria del C.
Komura, Taku
author_facet Jeong, Yunhee
Rachmadi, Muhammad Febrian
Valdés-Hernández, Maria del C.
Komura, Taku
author_sort Jeong, Yunhee
collection PubMed
description White matter hyperintensities (WMH) appear as regions of abnormally high signal intensity on T2-weighted magnetic resonance image (MRI) sequences. In particular, WMH have been noteworthy in age-related neuroscience for being a crucial biomarker for all types of dementia and brain aging processes. The automatic WMH segmentation is challenging because of their variable intensity range, size and shape. U-Net tackles this problem through the dense prediction and has shown competitive performances not only on WMH segmentation/detection but also on varied image segmentation tasks. However, its network architecture is high complex. In this study, we propose the use of Saliency U-Net and Irregularity map (IAM) to decrease the U-Net architectural complexity without performance loss. We trained Saliency U-Net using both: a T2-FLAIR MRI sequence and its correspondent IAM. Since IAM guides locating image intensity irregularities, in which WMH are possibly included, in the MRI slice, Saliency U-Net performs better than the original U-Net trained only using T2-FLAIR. The best performance was achieved with fewer parameters and shorter training time. Moreover, the application of dilated convolution enhanced Saliency U-Net by recognizing the shape of large WMH more accurately through multi-context learning. This network named Dilated Saliency U-Net improved Dice coefficient score to 0.5588 which was the best score among our experimental models, and recorded a relatively good sensitivity of 0.4747 with the shortest training time and the least number of parameters. In conclusion, based on our experimental results, incorporating IAM through Dilated Saliency U-Net resulted an appropriate approach for WMH segmentation.
format Online
Article
Text
id pubmed-6610522
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-66105222019-07-17 Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map Jeong, Yunhee Rachmadi, Muhammad Febrian Valdés-Hernández, Maria del C. Komura, Taku Front Aging Neurosci Neuroscience White matter hyperintensities (WMH) appear as regions of abnormally high signal intensity on T2-weighted magnetic resonance image (MRI) sequences. In particular, WMH have been noteworthy in age-related neuroscience for being a crucial biomarker for all types of dementia and brain aging processes. The automatic WMH segmentation is challenging because of their variable intensity range, size and shape. U-Net tackles this problem through the dense prediction and has shown competitive performances not only on WMH segmentation/detection but also on varied image segmentation tasks. However, its network architecture is high complex. In this study, we propose the use of Saliency U-Net and Irregularity map (IAM) to decrease the U-Net architectural complexity without performance loss. We trained Saliency U-Net using both: a T2-FLAIR MRI sequence and its correspondent IAM. Since IAM guides locating image intensity irregularities, in which WMH are possibly included, in the MRI slice, Saliency U-Net performs better than the original U-Net trained only using T2-FLAIR. The best performance was achieved with fewer parameters and shorter training time. Moreover, the application of dilated convolution enhanced Saliency U-Net by recognizing the shape of large WMH more accurately through multi-context learning. This network named Dilated Saliency U-Net improved Dice coefficient score to 0.5588 which was the best score among our experimental models, and recorded a relatively good sensitivity of 0.4747 with the shortest training time and the least number of parameters. In conclusion, based on our experimental results, incorporating IAM through Dilated Saliency U-Net resulted an appropriate approach for WMH segmentation. Frontiers Media S.A. 2019-06-27 /pmc/articles/PMC6610522/ /pubmed/31316369 http://dx.doi.org/10.3389/fnagi.2019.00150 Text en Copyright © 2019 Jeong, Rachmadi, Valdés-Hernández and Komura. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Jeong, Yunhee
Rachmadi, Muhammad Febrian
Valdés-Hernández, Maria del C.
Komura, Taku
Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map
title Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map
title_full Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map
title_fullStr Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map
title_full_unstemmed Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map
title_short Dilated Saliency U-Net for White Matter Hyperintensities Segmentation Using Irregularity Age Map
title_sort dilated saliency u-net for white matter hyperintensities segmentation using irregularity age map
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6610522/
https://www.ncbi.nlm.nih.gov/pubmed/31316369
http://dx.doi.org/10.3389/fnagi.2019.00150
work_keys_str_mv AT jeongyunhee dilatedsaliencyunetforwhitematterhyperintensitiessegmentationusingirregularityagemap
AT rachmadimuhammadfebrian dilatedsaliencyunetforwhitematterhyperintensitiessegmentationusingirregularityagemap
AT valdeshernandezmariadelc dilatedsaliencyunetforwhitematterhyperintensitiessegmentationusingirregularityagemap
AT komurataku dilatedsaliencyunetforwhitematterhyperintensitiessegmentationusingirregularityagemap