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Measuring proteins in H(2)O with 2D-IR spectroscopy
The amide I infrared band of proteins is highly sensitive to secondary structure, but studies under physiological conditions are prevented by strong, overlapping water absorptions, motivating the widespread use of deuterated solutions. H/D exchange raises fundamental questions regarding the impact o...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Royal Society of Chemistry
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6611063/ https://www.ncbi.nlm.nih.gov/pubmed/31341597 http://dx.doi.org/10.1039/c9sc01590f |
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author | Hume, Samantha Hithell, Gordon Greetham, Gregory M. Donaldson, Paul M. Towrie, Michael Parker, Anthony W. Baker, Matthew J. Hunt, Neil T. |
author_facet | Hume, Samantha Hithell, Gordon Greetham, Gregory M. Donaldson, Paul M. Towrie, Michael Parker, Anthony W. Baker, Matthew J. Hunt, Neil T. |
author_sort | Hume, Samantha |
collection | PubMed |
description | The amide I infrared band of proteins is highly sensitive to secondary structure, but studies under physiological conditions are prevented by strong, overlapping water absorptions, motivating the widespread use of deuterated solutions. H/D exchange raises fundamental questions regarding the impact of increased mass on protein dynamics, while deuteration is impractical for biomedical or commercial applications of protein IR spectroscopy. We show that 2D-IR spectroscopy can avoid this problem because the 2D-IR amide I signature of proteins dominates that of water even at sub-millimolar protein concentrations. Using equine blood serum as a test system, we investigate the significant implications of being able to measure the spectroscopy and dynamics of proteins in water, demonstrating relevance in areas ranging from fundamental science to the clinic. Measurements of vibrational relaxation dynamics of serum proteins reveals that deuteration slows down the rate of amide I vibrational relaxation by >10%, indicating a dynamic impact of isotopic exchange in some proteins. The unique link between protein secondary structure and 2D-IR amide I lineshape allows differentiation of signals due to albumin and globulin protein fractions in serum leading to measurements of the biomedically-important albumin to globulin ratio (AGR) with an accuracy of ±4% across a clinically-relevant range. Furthermore, we demonstrate that 2D-IR spectroscopy enables differentiation of the structurally similar globulin proteins IgG, IgA and IgM, opening up a straightforward spectroscopic approach to measuring levels of serum proteins that are currently only accessible via biomedical laboratory testing. |
format | Online Article Text |
id | pubmed-6611063 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-66110632019-07-24 Measuring proteins in H(2)O with 2D-IR spectroscopy Hume, Samantha Hithell, Gordon Greetham, Gregory M. Donaldson, Paul M. Towrie, Michael Parker, Anthony W. Baker, Matthew J. Hunt, Neil T. Chem Sci Chemistry The amide I infrared band of proteins is highly sensitive to secondary structure, but studies under physiological conditions are prevented by strong, overlapping water absorptions, motivating the widespread use of deuterated solutions. H/D exchange raises fundamental questions regarding the impact of increased mass on protein dynamics, while deuteration is impractical for biomedical or commercial applications of protein IR spectroscopy. We show that 2D-IR spectroscopy can avoid this problem because the 2D-IR amide I signature of proteins dominates that of water even at sub-millimolar protein concentrations. Using equine blood serum as a test system, we investigate the significant implications of being able to measure the spectroscopy and dynamics of proteins in water, demonstrating relevance in areas ranging from fundamental science to the clinic. Measurements of vibrational relaxation dynamics of serum proteins reveals that deuteration slows down the rate of amide I vibrational relaxation by >10%, indicating a dynamic impact of isotopic exchange in some proteins. The unique link between protein secondary structure and 2D-IR amide I lineshape allows differentiation of signals due to albumin and globulin protein fractions in serum leading to measurements of the biomedically-important albumin to globulin ratio (AGR) with an accuracy of ±4% across a clinically-relevant range. Furthermore, we demonstrate that 2D-IR spectroscopy enables differentiation of the structurally similar globulin proteins IgG, IgA and IgM, opening up a straightforward spectroscopic approach to measuring levels of serum proteins that are currently only accessible via biomedical laboratory testing. Royal Society of Chemistry 2019-05-14 /pmc/articles/PMC6611063/ /pubmed/31341597 http://dx.doi.org/10.1039/c9sc01590f Text en This journal is © The Royal Society of Chemistry 2019 https://creativecommons.org/licenses/by-nc/3.0/This article is freely available. This article is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported Licence (CC BY-NC 3.0) |
spellingShingle | Chemistry Hume, Samantha Hithell, Gordon Greetham, Gregory M. Donaldson, Paul M. Towrie, Michael Parker, Anthony W. Baker, Matthew J. Hunt, Neil T. Measuring proteins in H(2)O with 2D-IR spectroscopy |
title | Measuring proteins in H(2)O with 2D-IR spectroscopy
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title_full | Measuring proteins in H(2)O with 2D-IR spectroscopy
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title_fullStr | Measuring proteins in H(2)O with 2D-IR spectroscopy
|
title_full_unstemmed | Measuring proteins in H(2)O with 2D-IR spectroscopy
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title_short | Measuring proteins in H(2)O with 2D-IR spectroscopy
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title_sort | measuring proteins in h(2)o with 2d-ir spectroscopy |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6611063/ https://www.ncbi.nlm.nih.gov/pubmed/31341597 http://dx.doi.org/10.1039/c9sc01590f |
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