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Drug Targetor: a web interface to investigate the human druggome for over 500 phenotypes
SUMMARY: Results from hundreds of genome-wide association studies (GWAS) are now freely available and offer a catalogue of the association between phenotypes across medicine with variants in the genome. With the aim of using this data to better understand therapeutic mechanisms, we have developed Dr...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6612852/ https://www.ncbi.nlm.nih.gov/pubmed/30517594 http://dx.doi.org/10.1093/bioinformatics/bty982 |
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author | Gaspar, Héléna A Hübel, Christopher Breen, Gerome |
author_facet | Gaspar, Héléna A Hübel, Christopher Breen, Gerome |
author_sort | Gaspar, Héléna A |
collection | PubMed |
description | SUMMARY: Results from hundreds of genome-wide association studies (GWAS) are now freely available and offer a catalogue of the association between phenotypes across medicine with variants in the genome. With the aim of using this data to better understand therapeutic mechanisms, we have developed Drug Targetor, a web interface that allows the generation and exploration of drug–target networks of hundreds of phenotypes using GWAS data. Drug Targetor networks consist of drug and target nodes ordered by genetic association and connected by drug–target or drug–gene relationship. We show that Drug Targetor can help prioritize drugs, targets and drug–target interactions for a specific phenotype based on genetic evidence. AVAILABILITY AND IMPLEMENTATION: Drug Targetor v1.21 is a web application freely available online at drugtargetor.com and under MIT licence. The source code can be found at https://github.com/hagax8/drugtargetor. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-6612852 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-66128522019-07-12 Drug Targetor: a web interface to investigate the human druggome for over 500 phenotypes Gaspar, Héléna A Hübel, Christopher Breen, Gerome Bioinformatics Applications Notes SUMMARY: Results from hundreds of genome-wide association studies (GWAS) are now freely available and offer a catalogue of the association between phenotypes across medicine with variants in the genome. With the aim of using this data to better understand therapeutic mechanisms, we have developed Drug Targetor, a web interface that allows the generation and exploration of drug–target networks of hundreds of phenotypes using GWAS data. Drug Targetor networks consist of drug and target nodes ordered by genetic association and connected by drug–target or drug–gene relationship. We show that Drug Targetor can help prioritize drugs, targets and drug–target interactions for a specific phenotype based on genetic evidence. AVAILABILITY AND IMPLEMENTATION: Drug Targetor v1.21 is a web application freely available online at drugtargetor.com and under MIT licence. The source code can be found at https://github.com/hagax8/drugtargetor. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2019-07 2018-12-04 /pmc/articles/PMC6612852/ /pubmed/30517594 http://dx.doi.org/10.1093/bioinformatics/bty982 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Applications Notes Gaspar, Héléna A Hübel, Christopher Breen, Gerome Drug Targetor: a web interface to investigate the human druggome for over 500 phenotypes |
title | Drug Targetor: a web interface to investigate the human druggome for over 500 phenotypes |
title_full | Drug Targetor: a web interface to investigate the human druggome for over 500 phenotypes |
title_fullStr | Drug Targetor: a web interface to investigate the human druggome for over 500 phenotypes |
title_full_unstemmed | Drug Targetor: a web interface to investigate the human druggome for over 500 phenotypes |
title_short | Drug Targetor: a web interface to investigate the human druggome for over 500 phenotypes |
title_sort | drug targetor: a web interface to investigate the human druggome for over 500 phenotypes |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6612852/ https://www.ncbi.nlm.nih.gov/pubmed/30517594 http://dx.doi.org/10.1093/bioinformatics/bty982 |
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