Cargando…

Immune signature profiling identified prognostic factors for gastric cancer

OBJECTIVE: Tumor microenvironment, especially the host immune system, plays a pivotal role in tumor initiation and progression. Profiling of immune signature within tumor might uncover biomarkers for targeted therapies and clinical outcomes. However, systematic analysis of immune-related genes in ga...

Descripción completa

Detalles Bibliográficos
Autores principales: Yang, Wenhui, Lai, Zhiyong, Li, Yuan, Mu, Jianbing, Yang, Mudan, Xie, Jun, Xu, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6613504/
https://www.ncbi.nlm.nih.gov/pubmed/31354215
http://dx.doi.org/10.21147/j.issn.1000-9604.2019.03.08
_version_ 1783433053275684864
author Yang, Wenhui
Lai, Zhiyong
Li, Yuan
Mu, Jianbing
Yang, Mudan
Xie, Jun
Xu, Jun
author_facet Yang, Wenhui
Lai, Zhiyong
Li, Yuan
Mu, Jianbing
Yang, Mudan
Xie, Jun
Xu, Jun
author_sort Yang, Wenhui
collection PubMed
description OBJECTIVE: Tumor microenvironment, especially the host immune system, plays a pivotal role in tumor initiation and progression. Profiling of immune signature within tumor might uncover biomarkers for targeted therapies and clinical outcomes. However, systematic analysis of immune-related genes in gastric cancer (GC) has not been reported. METHODS: Expressions of a total of 718 immune-related genes were generated in 372 stomach adenocarcinoma (STAD) patients from The Cancer Genome Atlas (TCGA) database using RNA-sequencing data. Integrated bioinformatics analyses were performed to identify prognostic factors as well. RESULTS: Survival analyses revealed 73 genes, which were significantly associated with patient’s overall survival (OS). Taken together with clinicopathological parameters, we established a predictive model, containing 10 immune-related genes, which were NRP1, C6, CXCR4, LBP, PNMA1, TLR5, ITGA6, MICB, PBK and TNFRSF18, with powerful efficiency in distinguishing satisfactory or poor survival of STAD patients. Moreover, the top 3 ranked prognostic genes, NRP1, TGFβ2 and MFGE8, were also significantly associated with patient’s OS by an independent validation achieved from Kaplan-Meier plotter database. CONCLUSIONS: We profiled prognostic immune signature and established prognostic predictive model for GC, which could reflect immune disorders within tumor microenvironment, and also may provide novel predictive and therapeutic targets for GC patients in the near future.
format Online
Article
Text
id pubmed-6613504
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher AME Publishing Company
record_format MEDLINE/PubMed
spelling pubmed-66135042019-07-26 Immune signature profiling identified prognostic factors for gastric cancer Yang, Wenhui Lai, Zhiyong Li, Yuan Mu, Jianbing Yang, Mudan Xie, Jun Xu, Jun Chin J Cancer Res Original Article OBJECTIVE: Tumor microenvironment, especially the host immune system, plays a pivotal role in tumor initiation and progression. Profiling of immune signature within tumor might uncover biomarkers for targeted therapies and clinical outcomes. However, systematic analysis of immune-related genes in gastric cancer (GC) has not been reported. METHODS: Expressions of a total of 718 immune-related genes were generated in 372 stomach adenocarcinoma (STAD) patients from The Cancer Genome Atlas (TCGA) database using RNA-sequencing data. Integrated bioinformatics analyses were performed to identify prognostic factors as well. RESULTS: Survival analyses revealed 73 genes, which were significantly associated with patient’s overall survival (OS). Taken together with clinicopathological parameters, we established a predictive model, containing 10 immune-related genes, which were NRP1, C6, CXCR4, LBP, PNMA1, TLR5, ITGA6, MICB, PBK and TNFRSF18, with powerful efficiency in distinguishing satisfactory or poor survival of STAD patients. Moreover, the top 3 ranked prognostic genes, NRP1, TGFβ2 and MFGE8, were also significantly associated with patient’s OS by an independent validation achieved from Kaplan-Meier plotter database. CONCLUSIONS: We profiled prognostic immune signature and established prognostic predictive model for GC, which could reflect immune disorders within tumor microenvironment, and also may provide novel predictive and therapeutic targets for GC patients in the near future. AME Publishing Company 2019-06 /pmc/articles/PMC6613504/ /pubmed/31354215 http://dx.doi.org/10.21147/j.issn.1000-9604.2019.03.08 Text en Copyright © 2019 Chinese Journal of Cancer Research. All rights reserved. http://creativecommons.org/licenses/by-nc-sa/4.0/ This work is licensed under a Creative Commons Attribution-Non Commercial-Share Alike 4.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/
spellingShingle Original Article
Yang, Wenhui
Lai, Zhiyong
Li, Yuan
Mu, Jianbing
Yang, Mudan
Xie, Jun
Xu, Jun
Immune signature profiling identified prognostic factors for gastric cancer
title Immune signature profiling identified prognostic factors for gastric cancer
title_full Immune signature profiling identified prognostic factors for gastric cancer
title_fullStr Immune signature profiling identified prognostic factors for gastric cancer
title_full_unstemmed Immune signature profiling identified prognostic factors for gastric cancer
title_short Immune signature profiling identified prognostic factors for gastric cancer
title_sort immune signature profiling identified prognostic factors for gastric cancer
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6613504/
https://www.ncbi.nlm.nih.gov/pubmed/31354215
http://dx.doi.org/10.21147/j.issn.1000-9604.2019.03.08
work_keys_str_mv AT yangwenhui immunesignatureprofilingidentifiedprognosticfactorsforgastriccancer
AT laizhiyong immunesignatureprofilingidentifiedprognosticfactorsforgastriccancer
AT liyuan immunesignatureprofilingidentifiedprognosticfactorsforgastriccancer
AT mujianbing immunesignatureprofilingidentifiedprognosticfactorsforgastriccancer
AT yangmudan immunesignatureprofilingidentifiedprognosticfactorsforgastriccancer
AT xiejun immunesignatureprofilingidentifiedprognosticfactorsforgastriccancer
AT xujun immunesignatureprofilingidentifiedprognosticfactorsforgastriccancer