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Social support for collaboration and group awareness in life science research teams

BACKGROUND: Next-generation sequencing (NGS) technologies have revolutionarily reshaped the landscape of ’-omics’ research areas. They produce a plethora of information requiring specific knowledge in sample preparation, analysis and characterization. Additionally, expertise and competencies are req...

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Autores principales: Malandrino, Delfina, Manno, Ilaria, Negro, Alberto, Petta, Andrea, Serra, Luigi, Cantarella, Concita, Scarano, Vittorio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6615102/
https://www.ncbi.nlm.nih.gov/pubmed/31320922
http://dx.doi.org/10.1186/s13029-019-0074-4
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author Malandrino, Delfina
Manno, Ilaria
Negro, Alberto
Petta, Andrea
Serra, Luigi
Cantarella, Concita
Scarano, Vittorio
author_facet Malandrino, Delfina
Manno, Ilaria
Negro, Alberto
Petta, Andrea
Serra, Luigi
Cantarella, Concita
Scarano, Vittorio
author_sort Malandrino, Delfina
collection PubMed
description BACKGROUND: Next-generation sequencing (NGS) technologies have revolutionarily reshaped the landscape of ’-omics’ research areas. They produce a plethora of information requiring specific knowledge in sample preparation, analysis and characterization. Additionally, expertise and competencies are required when using bioinformatics tools and methods for efficient analysis, interpretation, and visualization of data. These skills are rarely covered in a single laboratory. More often the samples are isolated and purified in a first laboratory, sequencing is performed by a private company or a specialized lab, while the produced data are analyzed by a third group of researchers. In this scenario, the support, the communication, and the information sharing among researchers represent the key points to build a common knowledge and to meet the project objectives. RESULTS: We present ElGalaxy, a system designed and developed to support collaboration and information sharing among researchers. Specifically, we integrated collaborative functionalities within an application usually adopted by Life Science researchers. ElGalaxy, therefore, is the result of the integration of Galaxy, i.e., a Workflow Management System, with Elgg, i.e., a Social Network Engine. CONCLUSIONS: ElGalaxy enables scientists, that work on the same experiment, to collaborate and share information, to discuss about methods, and to evaluate results of the individual steps, as well as of entire activities, performed during their experiments. ElGalaxy also allows a greater team awareness, especially when experiments are carried out with researchers which belong to different and distributed research centers. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13029-019-0074-4) contains supplementary material, which is available to authorized users.
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spelling pubmed-66151022019-07-18 Social support for collaboration and group awareness in life science research teams Malandrino, Delfina Manno, Ilaria Negro, Alberto Petta, Andrea Serra, Luigi Cantarella, Concita Scarano, Vittorio Source Code Biol Med Software BACKGROUND: Next-generation sequencing (NGS) technologies have revolutionarily reshaped the landscape of ’-omics’ research areas. They produce a plethora of information requiring specific knowledge in sample preparation, analysis and characterization. Additionally, expertise and competencies are required when using bioinformatics tools and methods for efficient analysis, interpretation, and visualization of data. These skills are rarely covered in a single laboratory. More often the samples are isolated and purified in a first laboratory, sequencing is performed by a private company or a specialized lab, while the produced data are analyzed by a third group of researchers. In this scenario, the support, the communication, and the information sharing among researchers represent the key points to build a common knowledge and to meet the project objectives. RESULTS: We present ElGalaxy, a system designed and developed to support collaboration and information sharing among researchers. Specifically, we integrated collaborative functionalities within an application usually adopted by Life Science researchers. ElGalaxy, therefore, is the result of the integration of Galaxy, i.e., a Workflow Management System, with Elgg, i.e., a Social Network Engine. CONCLUSIONS: ElGalaxy enables scientists, that work on the same experiment, to collaborate and share information, to discuss about methods, and to evaluate results of the individual steps, as well as of entire activities, performed during their experiments. ElGalaxy also allows a greater team awareness, especially when experiments are carried out with researchers which belong to different and distributed research centers. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13029-019-0074-4) contains supplementary material, which is available to authorized users. BioMed Central 2019-07-08 /pmc/articles/PMC6615102/ /pubmed/31320922 http://dx.doi.org/10.1186/s13029-019-0074-4 Text en © The Author(s) 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Software
Malandrino, Delfina
Manno, Ilaria
Negro, Alberto
Petta, Andrea
Serra, Luigi
Cantarella, Concita
Scarano, Vittorio
Social support for collaboration and group awareness in life science research teams
title Social support for collaboration and group awareness in life science research teams
title_full Social support for collaboration and group awareness in life science research teams
title_fullStr Social support for collaboration and group awareness in life science research teams
title_full_unstemmed Social support for collaboration and group awareness in life science research teams
title_short Social support for collaboration and group awareness in life science research teams
title_sort social support for collaboration and group awareness in life science research teams
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6615102/
https://www.ncbi.nlm.nih.gov/pubmed/31320922
http://dx.doi.org/10.1186/s13029-019-0074-4
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