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Characterization of an acetyl xylan esterase from the marine bacterium Ochrovirga pacifica and its synergism with xylanase on beechwood xylan

BACKGROUND: Acetyl xylan esterase plays an important role in the complete enzymatic hydrolysis of lignocellulosic materials. It hydrolyzes the ester linkages of acetic acid in xylan and supports and enhances the activity of xylanase. This study was conducted to identify and overexpress the acetyl xy...

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Autores principales: Hettiarachchi, Sachithra Amarin, Kwon, Young-Kyung, Lee, Youngdeuk, Jo, Eunyoung, Eom, Tae-Yang, Kang, Yoon-Hyeok, Kang, Do-Hyung, De Zoysa, Mahanama, Marasinghe, Svini Dileepa, Oh, Chulhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6615230/
https://www.ncbi.nlm.nih.gov/pubmed/31286972
http://dx.doi.org/10.1186/s12934-019-1169-y
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author Hettiarachchi, Sachithra Amarin
Kwon, Young-Kyung
Lee, Youngdeuk
Jo, Eunyoung
Eom, Tae-Yang
Kang, Yoon-Hyeok
Kang, Do-Hyung
De Zoysa, Mahanama
Marasinghe, Svini Dileepa
Oh, Chulhong
author_facet Hettiarachchi, Sachithra Amarin
Kwon, Young-Kyung
Lee, Youngdeuk
Jo, Eunyoung
Eom, Tae-Yang
Kang, Yoon-Hyeok
Kang, Do-Hyung
De Zoysa, Mahanama
Marasinghe, Svini Dileepa
Oh, Chulhong
author_sort Hettiarachchi, Sachithra Amarin
collection PubMed
description BACKGROUND: Acetyl xylan esterase plays an important role in the complete enzymatic hydrolysis of lignocellulosic materials. It hydrolyzes the ester linkages of acetic acid in xylan and supports and enhances the activity of xylanase. This study was conducted to identify and overexpress the acetyl xylan esterase (AXE) gene revealed by the genomic sequencing of the marine bacterium Ochrovirga pacifica. RESULTS: The AXE gene has an 864-bp open reading frame that encodes 287 aa and consists of an AXE domain from aa 60 to 274. Gene was cloned to pET-16b vector and expressed the recombinant AXE (rAXE) in Escherichia coli BL21 (DE3). The predicted molecular mass was 31.75 kDa. The maximum specific activity (40.08 U/mg) was recorded at the optimal temperature and pH which were 50 °C and pH 8.0, respectively. The thermal stability assay showed that AXE maintains its residual activity almost constantly throughout and after incubation at 45 °C for 120 min. The synergism of AXE with xylanase on beechwood xylan, increased the relative activity 1.41-fold. CONCLUSION: Resulted higher relative activity of rAXE with commercially available xylanase on beechwood xylan showed its potential for the use of rAXE in industrial purposes as a de-esterification enzyme to hydrolyze xylan and hemicellulose-like complex substrates. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12934-019-1169-y) contains supplementary material, which is available to authorized users.
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spelling pubmed-66152302019-07-18 Characterization of an acetyl xylan esterase from the marine bacterium Ochrovirga pacifica and its synergism with xylanase on beechwood xylan Hettiarachchi, Sachithra Amarin Kwon, Young-Kyung Lee, Youngdeuk Jo, Eunyoung Eom, Tae-Yang Kang, Yoon-Hyeok Kang, Do-Hyung De Zoysa, Mahanama Marasinghe, Svini Dileepa Oh, Chulhong Microb Cell Fact Research BACKGROUND: Acetyl xylan esterase plays an important role in the complete enzymatic hydrolysis of lignocellulosic materials. It hydrolyzes the ester linkages of acetic acid in xylan and supports and enhances the activity of xylanase. This study was conducted to identify and overexpress the acetyl xylan esterase (AXE) gene revealed by the genomic sequencing of the marine bacterium Ochrovirga pacifica. RESULTS: The AXE gene has an 864-bp open reading frame that encodes 287 aa and consists of an AXE domain from aa 60 to 274. Gene was cloned to pET-16b vector and expressed the recombinant AXE (rAXE) in Escherichia coli BL21 (DE3). The predicted molecular mass was 31.75 kDa. The maximum specific activity (40.08 U/mg) was recorded at the optimal temperature and pH which were 50 °C and pH 8.0, respectively. The thermal stability assay showed that AXE maintains its residual activity almost constantly throughout and after incubation at 45 °C for 120 min. The synergism of AXE with xylanase on beechwood xylan, increased the relative activity 1.41-fold. CONCLUSION: Resulted higher relative activity of rAXE with commercially available xylanase on beechwood xylan showed its potential for the use of rAXE in industrial purposes as a de-esterification enzyme to hydrolyze xylan and hemicellulose-like complex substrates. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12934-019-1169-y) contains supplementary material, which is available to authorized users. BioMed Central 2019-07-08 /pmc/articles/PMC6615230/ /pubmed/31286972 http://dx.doi.org/10.1186/s12934-019-1169-y Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Hettiarachchi, Sachithra Amarin
Kwon, Young-Kyung
Lee, Youngdeuk
Jo, Eunyoung
Eom, Tae-Yang
Kang, Yoon-Hyeok
Kang, Do-Hyung
De Zoysa, Mahanama
Marasinghe, Svini Dileepa
Oh, Chulhong
Characterization of an acetyl xylan esterase from the marine bacterium Ochrovirga pacifica and its synergism with xylanase on beechwood xylan
title Characterization of an acetyl xylan esterase from the marine bacterium Ochrovirga pacifica and its synergism with xylanase on beechwood xylan
title_full Characterization of an acetyl xylan esterase from the marine bacterium Ochrovirga pacifica and its synergism with xylanase on beechwood xylan
title_fullStr Characterization of an acetyl xylan esterase from the marine bacterium Ochrovirga pacifica and its synergism with xylanase on beechwood xylan
title_full_unstemmed Characterization of an acetyl xylan esterase from the marine bacterium Ochrovirga pacifica and its synergism with xylanase on beechwood xylan
title_short Characterization of an acetyl xylan esterase from the marine bacterium Ochrovirga pacifica and its synergism with xylanase on beechwood xylan
title_sort characterization of an acetyl xylan esterase from the marine bacterium ochrovirga pacifica and its synergism with xylanase on beechwood xylan
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6615230/
https://www.ncbi.nlm.nih.gov/pubmed/31286972
http://dx.doi.org/10.1186/s12934-019-1169-y
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