Cargando…

Prognostic index of aberrant mRNA splicing profiling acts as a predictive indicator for hepatocellular carcinoma based on TCGA SpliceSeq data

Alternative splicing in tumor cells may be used as a molecular marker for the differential diagnosis of certain tumor types and assessment of prognosis. The aim of the present study was to investigate the associations among alternative splicing events, splicing factors, and the survival of patients...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wu, Hua-Yu, Peng, Zhi-Gang, He, Rong-Quan, Luo, Bin, Ma, Jie, Hu, Xiao-Hua, Dang, Yi-Wu, Chen, Gang, Pan, Shang-Ling
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	D.A. Spandidos 2019
Materias:	Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6615926/ https://www.ncbi.nlm.nih.gov/pubmed/31268164 http://dx.doi.org/10.3892/ijo.2019.4834

Ejemplares similares

Identification of survival-associated alternative splicing events and signatures in adrenocortical carcinoma based on TCGA SpliceSeq data
por: Xu, Ning, et al.
Publicado: (2020)

Comprehensive Analysis of Alternative Splicing Signature in Gastric Cancer Prognosis Based on The Cancer Genome Atlas (TCGA) and SpliceSeq Databases
por: Cheng, Xiaohu, et al.
Publicado: (2020)

SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts
por: Ryan, Michael C., et al.
Publicado: (2012)

Prognostic Signatures of Alternative Splicing Events in Esophageal Carcinoma Based on TCGA Splice-Seq Data
por: Ye, Ping, et al.
Publicado: (2021)

Systematic analysis and prediction model construction of alternative splicing events in hepatocellular carcinoma: a study on the basis of large-scale spliceseq data from The Cancer Genome Atlas
por: Yang, Lingpeng, et al.
Publicado: (2019)

Role of global aberrant alternative splicing events in papillary thyroid cancer prognosis
por: Lin, Peng, et al.
Publicado: (2019)

Role of alternative splicing signatures in the prognosis of glioblastoma
por: Xie, Zu‐cheng, et al.
Publicado: (2019)

Detection of aberrant splicing events in RNA-seq data using FRASER
por: Mertes, Christian, et al.
Publicado: (2021)

TSVdb: a web-tool for TCGA splicing variants analysis
por: Sun, Wenjie, et al.
Publicado: (2018)

Aberrant alternative splicing in breast cancer
por: Yang, Quan, et al.
Publicado: (2019)

Microsatellite Instability and Aberrant Pre-mRNA Splicing: How Intimate Is It?
por: Corcos, Laurent, et al.
Publicado: (2023)

Identification of cis-Acting Elements and Splicing Factors Involved in the Regulation of BIM Pre-mRNA Splicing
por: Juan, Wen Chun, et al.
Publicado: (2014)

Background splicing as a predictor of aberrant splicing in genetic disease
por: D, Alexieva, et al.
Publicado: (2022)

TCGASpliceSeq a compendium of alternative mRNA splicing in cancer
por: Ryan, Michael, et al.
Publicado: (2016)

Author Correction: Detection of aberrant splicing events in RNA-seq data using FRASER
por: Mertes, Christian, et al.
Publicado: (2022)

RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts
por: Sorber, Katherine, et al.
Publicado: (2011)

Regulation of RNA Splicing: Aberrant Splicing Regulation and Therapeutic Targets in Cancer
por: Kitamura, Koji, et al.
Publicado: (2021)

Diagnostic mRNA splicing assay for variants in BRCA1 and BRCA2 identified two novel pathogenic splicing aberrations
por: Wangensteen, Teresia, et al.
Publicado: (2019)

OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds
por: Wu, Jie, et al.
Publicado: (2013)

A novel splice site mutation in the UBE2A gene leads to aberrant mRNA splicing in a Chinese patient with X‐linked intellectual disability type Nascimento
por: Ma, Dingyuan, et al.
Publicado: (2019)

Aberrant splicing and drug resistance in AML
por: de Necochea-Campion, Rosalia, et al.
Publicado: (2016)

Mechanistic Insights of Aberrant Splicing with Splicing Factor Mutations Found in Myelodysplastic Syndromes
por: Kataoka, Naoyuki, et al.
Publicado: (2021)

SpliceJumper: a classification-based approach for calling splicing junctions from RNA-seq data
por: Chu, Chong, et al.
Publicado: (2015)

Downregulation of miR-199a-3p in Hepatocellular Carcinoma and Its Relevant Molecular Mechanism via GEO, TCGA Database and In Silico Analyses
por: Liu, An-gui, et al.
Publicado: (2020)

Improved detection of aberrant splicing using the Intron Jaccard Index
por: Scheller, Ines F., et al.
Publicado: (2023)

Aberrant splicing and defective mRNA production induced by somatic spliceosome mutations in myelodysplasia
por: Shiozawa, Yusuke, et al.
Publicado: (2018)

Supersplat—spliced RNA-seq alignment
por: Bryant, Douglas W., et al.
Publicado: (2010)

MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
por: Wang, Kai, et al.
Publicado: (2010)

DiffSplice: the genome-wide detection of differential splicing events with RNA-seq
por: Hu, Yin, et al.
Publicado: (2013)

Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs
por: LeGault, Laura H., et al.
Publicado: (2013)

Comprehensive analysis of TCGA data reveals correlation between DNA methylation and alternative splicing
por: Lin, Shuting, et al.
Publicado: (2022)

Genome-wide Analysis of the Alternative Splicing Profiles Revealed Novel Prognostic Index for Kidney Renal Cell Clear Cell Carcinoma
por: Gao, Li, et al.
Publicado: (2020)

Systematic analysis of CNGA3 splice variants identifies different mechanisms of aberrant splicing
por: Reuter, Peggy, et al.
Publicado: (2023)

All reported non-canonical splice site variants in GLA cause aberrant splicing
por: Okada, Eri, et al.
Publicado: (2023)

Profiling of prognostic alternative splicing in melanoma
por: Ma, Fu-Chao, et al.
Publicado: (2019)

ARH-seq: identification of differential splicing in RNA-seq data
por: Rasche, Axel, et al.
Publicado: (2014)

Aberrant Alternative Splicing Is Another Hallmark of Cancer
por: Ladomery, Michael
Publicado: (2013)

Aberrant RNA Splicing in Cancer and Drug Resistance
por: Wang, Bi-Dar, et al.
Publicado: (2018)

Aberrant RNA splicing and therapeutic opportunities in cancers
por: Yamauchi, Hirofumi, et al.
Publicado: (2021)

Detection of splice junctions from paired-end RNA-seq data by SpliceMap
por: Au, Kin Fai, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_7d8gdchqup73o0d1ea9ctv0abm