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Survey of Biosynthetic Gene Clusters from Sequenced Myxobacteria Reveals Unexplored Biosynthetic Potential

Coinciding with the increase in sequenced bacteria, mining of bacterial genomes for biosynthetic gene clusters (BGCs) has become a critical component of natural product discovery. The order Myxococcales, a reputable source of biologically active secondary metabolites, spans three suborders which all...

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Autores principales: Gregory, Katherine, Salvador, Laura A., Akbar, Shukria, Adaikpoh, Barbara I., Stevens, D. Cole
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6616573/
https://www.ncbi.nlm.nih.gov/pubmed/31238501
http://dx.doi.org/10.3390/microorganisms7060181
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author Gregory, Katherine
Salvador, Laura A.
Akbar, Shukria
Adaikpoh, Barbara I.
Stevens, D. Cole
author_facet Gregory, Katherine
Salvador, Laura A.
Akbar, Shukria
Adaikpoh, Barbara I.
Stevens, D. Cole
author_sort Gregory, Katherine
collection PubMed
description Coinciding with the increase in sequenced bacteria, mining of bacterial genomes for biosynthetic gene clusters (BGCs) has become a critical component of natural product discovery. The order Myxococcales, a reputable source of biologically active secondary metabolites, spans three suborders which all include natural product producing representatives. Utilizing the BiG-SCAPE-CORASON platform to generate a sequence similarity network that contains 994 BGCs from 36 sequenced myxobacteria deposited in the antiSMASH database, a total of 843 BGCs with lower than 75% similarity scores to characterized clusters within the MIBiG database are presented. This survey provides the biosynthetic diversity of these BGCs and an assessment of the predicted chemical space yet to be discovered. Considering the mere snapshot of myxobacteria included in this analysis, these untapped BGCs exemplify the potential for natural product discovery from myxobacteria.
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spelling pubmed-66165732019-07-18 Survey of Biosynthetic Gene Clusters from Sequenced Myxobacteria Reveals Unexplored Biosynthetic Potential Gregory, Katherine Salvador, Laura A. Akbar, Shukria Adaikpoh, Barbara I. Stevens, D. Cole Microorganisms Communication Coinciding with the increase in sequenced bacteria, mining of bacterial genomes for biosynthetic gene clusters (BGCs) has become a critical component of natural product discovery. The order Myxococcales, a reputable source of biologically active secondary metabolites, spans three suborders which all include natural product producing representatives. Utilizing the BiG-SCAPE-CORASON platform to generate a sequence similarity network that contains 994 BGCs from 36 sequenced myxobacteria deposited in the antiSMASH database, a total of 843 BGCs with lower than 75% similarity scores to characterized clusters within the MIBiG database are presented. This survey provides the biosynthetic diversity of these BGCs and an assessment of the predicted chemical space yet to be discovered. Considering the mere snapshot of myxobacteria included in this analysis, these untapped BGCs exemplify the potential for natural product discovery from myxobacteria. MDPI 2019-06-24 /pmc/articles/PMC6616573/ /pubmed/31238501 http://dx.doi.org/10.3390/microorganisms7060181 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Communication
Gregory, Katherine
Salvador, Laura A.
Akbar, Shukria
Adaikpoh, Barbara I.
Stevens, D. Cole
Survey of Biosynthetic Gene Clusters from Sequenced Myxobacteria Reveals Unexplored Biosynthetic Potential
title Survey of Biosynthetic Gene Clusters from Sequenced Myxobacteria Reveals Unexplored Biosynthetic Potential
title_full Survey of Biosynthetic Gene Clusters from Sequenced Myxobacteria Reveals Unexplored Biosynthetic Potential
title_fullStr Survey of Biosynthetic Gene Clusters from Sequenced Myxobacteria Reveals Unexplored Biosynthetic Potential
title_full_unstemmed Survey of Biosynthetic Gene Clusters from Sequenced Myxobacteria Reveals Unexplored Biosynthetic Potential
title_short Survey of Biosynthetic Gene Clusters from Sequenced Myxobacteria Reveals Unexplored Biosynthetic Potential
title_sort survey of biosynthetic gene clusters from sequenced myxobacteria reveals unexplored biosynthetic potential
topic Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6616573/
https://www.ncbi.nlm.nih.gov/pubmed/31238501
http://dx.doi.org/10.3390/microorganisms7060181
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