Bioactivity-explorer: a web application for interactive visualization and exploration of bioactivity data

To better leverage the accumulated bioactivity data in the ChEMBL database, we have developed Bioactivity-explorer, a web application for interactive visualization and exploration of the large-scale bioactivity data in ChEMBL. Mining and integration of the Therapeutic Target Database disease-target...

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Detalles Bibliográficos
Autores principales: Liang, Lu, Ma, Chunfeng, Du, Tengfei, Zhao, Yufei, Zhao, Xiaoyong, Liu, Mengmeng, Wang, Zhonghua, Lin, Jianping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2019
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6617623/
https://www.ncbi.nlm.nih.gov/pubmed/31292807
http://dx.doi.org/10.1186/s13321-019-0370-7
Descripción
Sumario:To better leverage the accumulated bioactivity data in the ChEMBL database, we have developed Bioactivity-explorer, a web application for interactive visualization and exploration of the large-scale bioactivity data in ChEMBL. Mining and integration of the Therapeutic Target Database disease-target mapping into the ChEMBL database has enabled Bioactivity-explorer to include 493,430 scaffolds, 31,400,000 matched molecular pairs, 1330,220 target–target interactions in terms of shared active compounds, 4526,718 target–target interactions in terms of shared active scaffolds, 97,041,700 molecule–molecule interactions and 14,974 disease-target mappings. This web tool is available at http://cadd.pharmacy.nankai.edu.cn/b17r. The source codes of the front end and back end, released under MIT license, can be found at GitHub. [Image: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13321-019-0370-7) contains supplementary material, which is available to authorized users.

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