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LAB–QA2GO: A Free, Easy-to-Use Toolbox for the Quality Assessment of Magnetic Resonance Imaging Data

Image characteristics of magnetic resonance imaging (MRI) data (e.g., signal-to-noise ratio, SNR) may change over the course of a study. To monitor these changes a quality assurance (QA) protocol is necessary. QA can be realized both by performing regular phantom measurements and by controlling the...

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Autores principales: Vogelbacher, Christoph, Bopp, Miriam H. A., Schuster, Verena, Herholz, Peer, Jansen, Andreas, Sommer, Jens
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6617644/
https://www.ncbi.nlm.nih.gov/pubmed/31333406
http://dx.doi.org/10.3389/fnins.2019.00688
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author Vogelbacher, Christoph
Bopp, Miriam H. A.
Schuster, Verena
Herholz, Peer
Jansen, Andreas
Sommer, Jens
author_facet Vogelbacher, Christoph
Bopp, Miriam H. A.
Schuster, Verena
Herholz, Peer
Jansen, Andreas
Sommer, Jens
author_sort Vogelbacher, Christoph
collection PubMed
description Image characteristics of magnetic resonance imaging (MRI) data (e.g., signal-to-noise ratio, SNR) may change over the course of a study. To monitor these changes a quality assurance (QA) protocol is necessary. QA can be realized both by performing regular phantom measurements and by controlling the human MRI datasets (e.g., noise detection in structural or movement parameters in functional datasets). Several QA tools for the assessment of MRI data quality have been developed. Many of them are freely available. This allows in principle the flexible set-up of a QA protocol specifically adapted to the aims of one’s own study. However, setup and maintenance of these tools takes substantial time, in particular since the installation and operation often require a fair amount of technical knowledge. In this article we present a light-weighted virtual machine, named LAB–QA2GO, which provides scripts for fully automated QA analyses of phantom and human datasets. This virtual machine is ready for analysis by starting it the first time. With minimal configuration in the guided web-interface the first analysis can start within 10 min, while adapting to local phantoms and needs is easily possible. The usability and scope of LAB–QA2GO is illustrated using a data set from the QA protocol of our lab. With LAB–QA2GO we hope to provide an easy-to-use toolbox that is able to calculate QA statistics without high effort.
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spelling pubmed-66176442019-07-22 LAB–QA2GO: A Free, Easy-to-Use Toolbox for the Quality Assessment of Magnetic Resonance Imaging Data Vogelbacher, Christoph Bopp, Miriam H. A. Schuster, Verena Herholz, Peer Jansen, Andreas Sommer, Jens Front Neurosci Neuroscience Image characteristics of magnetic resonance imaging (MRI) data (e.g., signal-to-noise ratio, SNR) may change over the course of a study. To monitor these changes a quality assurance (QA) protocol is necessary. QA can be realized both by performing regular phantom measurements and by controlling the human MRI datasets (e.g., noise detection in structural or movement parameters in functional datasets). Several QA tools for the assessment of MRI data quality have been developed. Many of them are freely available. This allows in principle the flexible set-up of a QA protocol specifically adapted to the aims of one’s own study. However, setup and maintenance of these tools takes substantial time, in particular since the installation and operation often require a fair amount of technical knowledge. In this article we present a light-weighted virtual machine, named LAB–QA2GO, which provides scripts for fully automated QA analyses of phantom and human datasets. This virtual machine is ready for analysis by starting it the first time. With minimal configuration in the guided web-interface the first analysis can start within 10 min, while adapting to local phantoms and needs is easily possible. The usability and scope of LAB–QA2GO is illustrated using a data set from the QA protocol of our lab. With LAB–QA2GO we hope to provide an easy-to-use toolbox that is able to calculate QA statistics without high effort. Frontiers Media S.A. 2019-07-03 /pmc/articles/PMC6617644/ /pubmed/31333406 http://dx.doi.org/10.3389/fnins.2019.00688 Text en Copyright © 2019 Vogelbacher, Bopp, Schuster, Herholz, Jansen and Sommer. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Vogelbacher, Christoph
Bopp, Miriam H. A.
Schuster, Verena
Herholz, Peer
Jansen, Andreas
Sommer, Jens
LAB–QA2GO: A Free, Easy-to-Use Toolbox for the Quality Assessment of Magnetic Resonance Imaging Data
title LAB–QA2GO: A Free, Easy-to-Use Toolbox for the Quality Assessment of Magnetic Resonance Imaging Data
title_full LAB–QA2GO: A Free, Easy-to-Use Toolbox for the Quality Assessment of Magnetic Resonance Imaging Data
title_fullStr LAB–QA2GO: A Free, Easy-to-Use Toolbox for the Quality Assessment of Magnetic Resonance Imaging Data
title_full_unstemmed LAB–QA2GO: A Free, Easy-to-Use Toolbox for the Quality Assessment of Magnetic Resonance Imaging Data
title_short LAB–QA2GO: A Free, Easy-to-Use Toolbox for the Quality Assessment of Magnetic Resonance Imaging Data
title_sort lab–qa2go: a free, easy-to-use toolbox for the quality assessment of magnetic resonance imaging data
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6617644/
https://www.ncbi.nlm.nih.gov/pubmed/31333406
http://dx.doi.org/10.3389/fnins.2019.00688
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