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Detection of probable dementia cases in undiagnosed patients using structured and unstructured electronic health records
BACKGROUND: Dementia is underdiagnosed in both the general population and among Veterans. This underdiagnosis decreases quality of life, reduces opportunities for interventions, and increases health-care costs. New approaches are therefore necessary to facilitate the timely detection of dementia. Th...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6617952/ https://www.ncbi.nlm.nih.gov/pubmed/31288818 http://dx.doi.org/10.1186/s12911-019-0846-4 |
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author | Shao, Yijun Zeng, Qing T. Chen, Kathryn K. Shutes-David, Andrew Thielke, Stephen M. Tsuang, Debby W. |
author_facet | Shao, Yijun Zeng, Qing T. Chen, Kathryn K. Shutes-David, Andrew Thielke, Stephen M. Tsuang, Debby W. |
author_sort | Shao, Yijun |
collection | PubMed |
description | BACKGROUND: Dementia is underdiagnosed in both the general population and among Veterans. This underdiagnosis decreases quality of life, reduces opportunities for interventions, and increases health-care costs. New approaches are therefore necessary to facilitate the timely detection of dementia. This study seeks to identify cases of undiagnosed dementia by developing and validating a weakly supervised machine-learning approach that incorporates the analysis of both structured and unstructured electronic health record (EHR) data. METHODS: A topic modeling approach that included latent Dirichlet allocation, stable topic extraction, and random sampling was applied to VHA EHRs. Topic features from unstructured data and features from structured data were compared between Veterans with (n = 1861) and without (n = 9305) ICD-9 dementia codes. A logistic regression model was used to develop dementia prediction scores, and manual reviews were conducted to validate the machine-learning results. RESULTS: A total of 853 features were identified (290 topics, 174 non-dementia ICD codes, 159 CPT codes, 59 medications, and 171 note types) for the development of logistic regression prediction scores. These scores were validated in a subset of Veterans without ICD-9 dementia codes (n = 120) by experts in dementia who performed manual record reviews and achieved a high level of inter-rater agreement. The manual reviews were used to develop a receiver of characteristic (ROC) curve with different thresholds for case detection, including a threshold of 0.061, which produced an optimal sensitivity (0.825) and specificity (0.832). CONCLUSIONS: Dementia is underdiagnosed, and thus, ICD codes alone cannot serve as a gold standard for diagnosis. However, this study suggests that imperfect data (e.g., ICD codes in combination with other EHR features) can serve as a silver standard to develop a risk model, apply that model to patients without dementia codes, and then select a case-detection threshold. The study is one of the first to utilize both structured and unstructured EHRs to develop risk scores for the diagnosis of dementia. |
format | Online Article Text |
id | pubmed-6617952 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-66179522019-07-22 Detection of probable dementia cases in undiagnosed patients using structured and unstructured electronic health records Shao, Yijun Zeng, Qing T. Chen, Kathryn K. Shutes-David, Andrew Thielke, Stephen M. Tsuang, Debby W. BMC Med Inform Decis Mak Research Article BACKGROUND: Dementia is underdiagnosed in both the general population and among Veterans. This underdiagnosis decreases quality of life, reduces opportunities for interventions, and increases health-care costs. New approaches are therefore necessary to facilitate the timely detection of dementia. This study seeks to identify cases of undiagnosed dementia by developing and validating a weakly supervised machine-learning approach that incorporates the analysis of both structured and unstructured electronic health record (EHR) data. METHODS: A topic modeling approach that included latent Dirichlet allocation, stable topic extraction, and random sampling was applied to VHA EHRs. Topic features from unstructured data and features from structured data were compared between Veterans with (n = 1861) and without (n = 9305) ICD-9 dementia codes. A logistic regression model was used to develop dementia prediction scores, and manual reviews were conducted to validate the machine-learning results. RESULTS: A total of 853 features were identified (290 topics, 174 non-dementia ICD codes, 159 CPT codes, 59 medications, and 171 note types) for the development of logistic regression prediction scores. These scores were validated in a subset of Veterans without ICD-9 dementia codes (n = 120) by experts in dementia who performed manual record reviews and achieved a high level of inter-rater agreement. The manual reviews were used to develop a receiver of characteristic (ROC) curve with different thresholds for case detection, including a threshold of 0.061, which produced an optimal sensitivity (0.825) and specificity (0.832). CONCLUSIONS: Dementia is underdiagnosed, and thus, ICD codes alone cannot serve as a gold standard for diagnosis. However, this study suggests that imperfect data (e.g., ICD codes in combination with other EHR features) can serve as a silver standard to develop a risk model, apply that model to patients without dementia codes, and then select a case-detection threshold. The study is one of the first to utilize both structured and unstructured EHRs to develop risk scores for the diagnosis of dementia. BioMed Central 2019-07-09 /pmc/articles/PMC6617952/ /pubmed/31288818 http://dx.doi.org/10.1186/s12911-019-0846-4 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Shao, Yijun Zeng, Qing T. Chen, Kathryn K. Shutes-David, Andrew Thielke, Stephen M. Tsuang, Debby W. Detection of probable dementia cases in undiagnosed patients using structured and unstructured electronic health records |
title | Detection of probable dementia cases in undiagnosed patients using structured and unstructured electronic health records |
title_full | Detection of probable dementia cases in undiagnosed patients using structured and unstructured electronic health records |
title_fullStr | Detection of probable dementia cases in undiagnosed patients using structured and unstructured electronic health records |
title_full_unstemmed | Detection of probable dementia cases in undiagnosed patients using structured and unstructured electronic health records |
title_short | Detection of probable dementia cases in undiagnosed patients using structured and unstructured electronic health records |
title_sort | detection of probable dementia cases in undiagnosed patients using structured and unstructured electronic health records |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6617952/ https://www.ncbi.nlm.nih.gov/pubmed/31288818 http://dx.doi.org/10.1186/s12911-019-0846-4 |
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