Cargando…

Introducing high school students to the Gene Ontology classification system

We present a tutorial that introduces high school students to the Gene Ontology classification system which is widely used in genomics and systems biology studies to characterize large sets of genes based on functional and structural information. This classification system is a valuable and standard...

Descripción completa

Detalles Bibliográficos
Autores principales:	Dedhia, Mehek, Kohetuk, Kenneth, Crusio, Wim E., Delprato, Anna
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	F1000 Research Limited 2019
Materias:	Method Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6619382/ https://www.ncbi.nlm.nih.gov/pubmed/31431825 http://dx.doi.org/10.12688/f1000research.18061.4

Ejemplares similares

Sex differences in gene expression patterns associated with the APOE4 allele
por: Hsu, Michelle, et al.
Publicado: (2019)

Engaging high school students in neuroscience research -through an e-internship program
por: Crusio, Wim E, et al.
Publicado: (2017)

Narcolepsy in Parkinson's disease with insulin resistance
por: Chunduri, Alisha, et al.
Publicado: (2022)

Analysis of morphine responses in mice reveals a QTL on Chromosome 7
por: Crusio, Wim E., et al.
Publicado: (2016)

Threshold-free high-power methods for the ontological analysis of genome-wide gene-expression studies
por: Nilsson, Björn, et al.
Publicado: (2007)

An ontology for cell types
por: Bard, Jonathan, et al.
Publicado: (2005)

Relations in biomedical ontologies
por: Smith, Barry, et al.
Publicado: (2005)

Simplified ontologies allowing comparison of developmental mammalian gene expression
por: Kruger, Adele, et al.
Publicado: (2007)

Gene ontology analysis for RNA-seq: accounting for selection bias
por: Young, Matthew D, et al.
Publicado: (2010)

Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns
por: Wood, Valerie, et al.
Publicado: (2020)

Common genetic signatures of Alzheimer’s disease in Down Syndrome
por: Sharma, Ayati, et al.
Publicado: (2021)

Using ontologies to describe mouse phenotypes
por: Gkoutos, Georgios V, et al.
Publicado: (2005)

Integrating phenotype ontologies across multiple species
por: Mungall, Christopher J, et al.
Publicado: (2010)

Uberon, an integrative multi-species anatomy ontology
por: Mungall, Christopher J, et al.
Publicado: (2012)

Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments
por: Manikandan, Karuppasamy, et al.
Publicado: (2008)

Gene Ontology annotation quality analysis in model eukaryotes
por: Buza, Teresia J., et al.
Publicado: (2008)

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
por: Doniger, Scott W, et al.
Publicado: (2003)

The Sequence Ontology: a tool for the unification of genome annotations
por: Eilbeck, Karen, et al.
Publicado: (2005)

Individualised human phenotype ontology gene panels improve clinical whole exome and genome sequencing analytical efficacy in a cohort of developmental and epileptic encephalopathies
por: Henry, Olivia J., et al.
Publicado: (2023)

The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information
por: Smith, Cynthia L, et al.
Publicado: (2005)

Finding pathway-modulating genes from a novel Ontology Fingerprint-derived gene network
por: Qin, Tingting, et al.
Publicado: (2014)

Semantic similarity and machine learning with ontologies
por: Kulmanov, Maxat, et al.
Publicado: (2020)

NOA: a novel Network Ontology Analysis method
por: Wang, Jiguang, et al.
Publicado: (2011)

Starting Them Young: Introducing High School Students to Community Gerontology
por: Getz, Marjorie, et al.
Publicado: (2020)

An optogenetics device with smartphone video capture to introduce neurotechnology and systems neuroscience to high school students
por: Luo, Liudi, et al.
Publicado: (2022)

Ontologies relevant to behaviour change interventions: a method for their development
por: Wright, Alison J., et al.
Publicado: (2020)

An Alignment-Based Implementation of a Holistic Ontology Integration Method()
por: Osman, Inès, et al.
Publicado: (2021)

Gene Expression Data Classification Using Consensus Independent Component Analysis
por: Zheng, Chun-Hou, et al.
Publicado: (2008)

Classification methods for the development of genomic signatures from high-dimensional data
por: Moon, Hojin, et al.
Publicado: (2006)

Ontology-aware deep learning enables ultrafast and interpretable source tracking among sub-million microbial community samples from hundreds of niches
por: Zha, Yuguo, et al.
Publicado: (2022)

Classification of Genes: Standardized Clinical Validity Assessment of Gene–Disease Associations Aids Diagnostic Exome Analysis and Reclassifications
por: Smith, Erica D., et al.
Publicado: (2017)

A method for high-throughput gene expression signature analysis
por: Peck, David, et al.
Publicado: (2006)

Fuzzy Ontology-Based System for Driver Behavior Classification
por: Fernandez, Susel, et al.
Publicado: (2022)

Hybrid Method Based on Information Gain and Support Vector Machine for Gene Selection in Cancer Classification
por: Gao, Lingyun, et al.
Publicado: (2017)

taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time
por: Corvelo, André, et al.
Publicado: (2018)

Identification of high-confidence RNA regulatory elements by combinatorial classification of RNA–protein binding sites
por: Li, Yang Eric, et al.
Publicado: (2017)

Introducing HEP to high-school and university students through ATLAS event analysis tools
por: Fassouliotis, Dimitris, et al.
Publicado: (2017)

Bringing Ontology to the Gene Ontology
por: Williams, Jennifer, et al.
Publicado: (2003)

The Neural/Immune Gene Ontology: clipping the Gene Ontology for neurological and immunological systems
por: Geifman, Nophar, et al.
Publicado: (2010)

Highly accurate quantification of allelic gene expression for population and disease genetics
por: Saukkonen, Anna, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_rrueol7nnmgmjru2ohnt8o0agu