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MycoResistance: a curated resource of drug resistance molecules in Mycobacteria

The emergence and spread of drug-resistant Mycobacterium tuberculosis is of global concern. To improve the understanding of drug resistance in Mycobacteria, numerous studies have been performed to discover diagnostic markers and genetic determinants associated with resistance to anti-tuberculosis dr...

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Autores principales: Dai, Enyu, Zhang, Hao, Zhou, Xu, Song, Qian, Li, Di, Luo, Lei, Xu, Xinyu, Jiang, Wei, Ling, Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6619405/
https://www.ncbi.nlm.nih.gov/pubmed/31290951
http://dx.doi.org/10.1093/database/baz074
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author Dai, Enyu
Zhang, Hao
Zhou, Xu
Song, Qian
Li, Di
Luo, Lei
Xu, Xinyu
Jiang, Wei
Ling, Hong
author_facet Dai, Enyu
Zhang, Hao
Zhou, Xu
Song, Qian
Li, Di
Luo, Lei
Xu, Xinyu
Jiang, Wei
Ling, Hong
author_sort Dai, Enyu
collection PubMed
description The emergence and spread of drug-resistant Mycobacterium tuberculosis is of global concern. To improve the understanding of drug resistance in Mycobacteria, numerous studies have been performed to discover diagnostic markers and genetic determinants associated with resistance to anti-tuberculosis drug. However, the related information is scattered in a massive body of literature, which is inconvenient for researchers to investigate the molecular mechanism of drug resistance. Therefore, we manually collected 1707 curated associations between 73 compounds and 132 molecules (including coding genes and non-coding RNAs) in 6 mycobacterial species from 465 studies. The experimental details of molecular epidemiology and mechanism exploration research were also summarized and recorded in our work. In addition, multidrug resistance and extensively drug resistance molecules were also extracted to interpret the molecular mechanisms that are responsible for cross resistance among anti-tuberculosis drugs. Finally, we constructed an omnibus repository named MycoResistance, a user friendly interface to conveniently browse, search and download all related entries. We hope that this elaborate database will serve as a beneficial resource for mechanism explanations, precise diagnosis and effective treatment of drug-resistant mycobacterial strains.
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spelling pubmed-66194052019-07-15 MycoResistance: a curated resource of drug resistance molecules in Mycobacteria Dai, Enyu Zhang, Hao Zhou, Xu Song, Qian Li, Di Luo, Lei Xu, Xinyu Jiang, Wei Ling, Hong Database (Oxford) Original Article The emergence and spread of drug-resistant Mycobacterium tuberculosis is of global concern. To improve the understanding of drug resistance in Mycobacteria, numerous studies have been performed to discover diagnostic markers and genetic determinants associated with resistance to anti-tuberculosis drug. However, the related information is scattered in a massive body of literature, which is inconvenient for researchers to investigate the molecular mechanism of drug resistance. Therefore, we manually collected 1707 curated associations between 73 compounds and 132 molecules (including coding genes and non-coding RNAs) in 6 mycobacterial species from 465 studies. The experimental details of molecular epidemiology and mechanism exploration research were also summarized and recorded in our work. In addition, multidrug resistance and extensively drug resistance molecules were also extracted to interpret the molecular mechanisms that are responsible for cross resistance among anti-tuberculosis drugs. Finally, we constructed an omnibus repository named MycoResistance, a user friendly interface to conveniently browse, search and download all related entries. We hope that this elaborate database will serve as a beneficial resource for mechanism explanations, precise diagnosis and effective treatment of drug-resistant mycobacterial strains. Oxford University Press 2019-07-10 /pmc/articles/PMC6619405/ /pubmed/31290951 http://dx.doi.org/10.1093/database/baz074 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Dai, Enyu
Zhang, Hao
Zhou, Xu
Song, Qian
Li, Di
Luo, Lei
Xu, Xinyu
Jiang, Wei
Ling, Hong
MycoResistance: a curated resource of drug resistance molecules in Mycobacteria
title MycoResistance: a curated resource of drug resistance molecules in Mycobacteria
title_full MycoResistance: a curated resource of drug resistance molecules in Mycobacteria
title_fullStr MycoResistance: a curated resource of drug resistance molecules in Mycobacteria
title_full_unstemmed MycoResistance: a curated resource of drug resistance molecules in Mycobacteria
title_short MycoResistance: a curated resource of drug resistance molecules in Mycobacteria
title_sort mycoresistance: a curated resource of drug resistance molecules in mycobacteria
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6619405/
https://www.ncbi.nlm.nih.gov/pubmed/31290951
http://dx.doi.org/10.1093/database/baz074
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